PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0288s0210.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 160aa MW: 17939.3 Da PI: 10.5938 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 134.8 | 1.1e-41 | 22 | 108 | 83 | 170 |
YABBY 83 ksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + ++ + s+s+s++++ +++++e pr+pp+ PekrqrvPsaynrfikeeiqrika+nPdi hreafs+aaknWahfP+ihfg SapurV1A.0288s0210.6.p 22 EDLNIDSGSSSKSNKVTA-FKSTEHEPPRMPPIRPAPEKRQRVPSAYNRFIKEEIQRIKATNPDINHREAFSTAAKNWAHFPHIHFG 107 333344444444444433.577889999****7777**************************************************9 PP YABBY 170 l 170 l SapurV1A.0288s0210.6.p 108 L 108 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.1E-39 | 19 | 108 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.55E-8 | 52 | 101 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 57 | 102 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGASFQALPL QDPQKLNLIN SEDLNIDSGS SSKSNKVTAF KSTEHEPPRM PPIRPAPEKR 60 QRVPSAYNRF IKEEIQRIKA TNPDINHREA FSTAAKNWAH FPHIHFGLKL DSNKHPKLDH 120 QSFAGEGTQN TSGLYDINGV LKRERKKRVS GSLRVCMLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0288s0210.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090571 | 2e-42 | BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA. | |||
GenBank | BT090811 | 2e-42 | BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453770.1 | 1e-85 | axial regulator YABBY 5 isoform X4 | ||||
Swissprot | Q9XFB0 | 6e-44 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2K2C1G2 | 3e-84 | A0A2K2C1G2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22180.1 | 7e-85 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-38 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0288s0210.6.p |
Publications ? help Back to Top | |||
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