PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0288s0210.5.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 190aa MW: 21004.8 Da PI: 8.5044

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0288s0210.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.3	5.8e-68	3	156	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 + se+vCyv+CnfCntilavsvPs+sl+++vtvrCGhC +llsvn+ + q+l+ ++ + l+ ++e+ n++s +++ SapurV1A.0288s0210.5.p 3 LELVSERVCYVHCNFCNTILAVSVPSSSLLNTVTVRCGHCGNLLSVNMGASFQALPLQDP-------QKLNLINSEDLNIDSGSSSK 82 56789*************************************************9995.......33333344444444433333 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++++ +++++e pr+pp irPPekrqrvPsaynrfikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl SapurV1A.0288s0210.5.p 83 -----SNKVTA-FKSTEHEPPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKATNPDINHREAFSTAAKNWAHFPHIHFGL 156 .....333322.3457789999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.0E-72	7	156	IPR006780	YABBY protein
SuperFamily	SSF47095	3.93E-8	99	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	104	150	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSLELVSERV CYVHCNFCNT ILAVSVPSSS LLNTVTVRCG HCGNLLSVNM GASFQALPLQ 60 DPQKLNLINS EDLNIDSGSS SKSNKVTAFK STEHEPPRMP PIRPPEKRQR VPSAYNRFIK 120 EEIQRIKATN PDINHREAFS TAAKNWAHFP HIHFGLKLDS NKHPKLDHQS FAGEGTQNTS 180 GLYDINGVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0288s0210.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	0.0	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453770.1	1e-122	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	1e-73	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2K2C1G2	1e-121	A0A2K2C1G2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	1e-107	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-62	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0288s0210.5.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]