PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0288s0210.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 209aa MW: 23205.5 Da PI: 9.8099 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 215.4 | 1.8e-66 | 3 | 157 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 + se+vCyv+CnfCntilavsvPs+sl+++vtvrCGhC +llsvn+ + q+l+ ++ + l+ ++e+ n++s +++ SapurV1A.0288s0210.2.p 3 LELVSERVCYVHCNFCNTILAVSVPSSSLLNTVTVRCGHCGNLLSVNMGASFQALPLQDP-------QKLNLINSEDLNIDSGSSSK 82 56789***************************************************9995.......33333344444444433333 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++++ +++++e pr+pp+ PekrqrvPsaynrfikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl SapurV1A.0288s0210.2.p 83 -----SNKVTA-FKSTEHEPPRMPPIRPAPEKRQRVPSAYNRFIKEEIQRIKATNPDINHREAFSTAAKNWAHFPHIHFGL 157 .....333322.34678899*****7777**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.3E-70 | 7 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.06E-7 | 101 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.1E-4 | 106 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSLELVSERV CYVHCNFCNT ILAVSVPSSS LLNTVTVRCG HCGNLLSVNM GASFQALPLQ 60 DPQKLNLINS EDLNIDSGSS SKSNKVTAFK STEHEPPRMP PIRPAPEKRQ RVPSAYNRFI 120 KEEIQRIKAT NPDINHREAF STAAKNWAHF PHIHFGLKLD SNKHPKLDHQ SFAGEGTQNT 180 SGLYDINGVL KRERKKRVSG SLRVCMLT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0288s0210.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147402 | 1e-174 | EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453770.1 | 1e-121 | axial regulator YABBY 5 isoform X4 | ||||
Swissprot | Q9XFB0 | 1e-71 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2K2C1G2 | 1e-119 | A0A2K2C1G2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22180.1 | 1e-105 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-65 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0288s0210.2.p |
Publications ? help Back to Top | |||
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