PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0288s0210.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 209aa MW: 23205.5 Da PI: 9.8099

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0288s0210.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	215.4	1.8e-66	3	157	3	170
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 + se+vCyv+CnfCntilavsvPs+sl+++vtvrCGhC +llsvn+ + q+l+ ++ + l+ ++e+ n++s +++ SapurV1A.0288s0210.1.p 3 LELVSERVCYVHCNFCNTILAVSVPSSSLLNTVTVRCGHCGNLLSVNMGASFQALPLQDP-------QKLNLINSEDLNIDSGSSSK 82 56789*************************************************9995.......33333344444444433333 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++++ +++++e pr+pp+ PekrqrvPsaynrfikeeiqrika+nPdi hreafs+aaknWahfP+ihfgl SapurV1A.0288s0210.1.p 83 -----SNKVTA-FKSTEHEPPRMPPIRPAPEKRQRVPSAYNRFIKEEIQRIKATNPDINHREAFSTAAKNWAHFPHIHFGL 157 .....333322.34678899*7777************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-70	7	157	IPR006780	YABBY protein
SuperFamily	SSF47095	1.06E-7	101	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-4	106	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSLELVSERV CYVHCNFCNT ILAVSVPSSS LLNTVTVRCG HCGNLLSVNM GASFQALPLQ 60 DPQKLNLINS EDLNIDSGSS SKSNKVTAFK STEHEPPRMP PIRPAPEKRQ RVPSAYNRFI 120 KEEIQRIKAT NPDINHREAF STAAKNWAHF PHIHFGLKLD SNKHPKLDHQ SFAGEGTQNT 180 SGLYDINGVL KRERKKRVSG SLRVCMLT*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0288s0210.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	1e-174	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453770.1	1e-121	axial regulator YABBY 5 isoform X4
Swissprot	Q9XFB0	1e-71	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2K2C1G2	1e-119	A0A2K2C1G2_POPTR; Uncharacterized protein
STRING	POPTR_0001s22180.1	1e-105	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-65	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0288s0210.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]