PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0282s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24314.1 Da    PI: 10.1052
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0282s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.72.1e-30959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss
  SapurV1A.0282s0240.1.p  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTRGKLYEFSS 59
                            79***********************************************96 PP
2K-box78.31.9e-2682171998
                   K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                               + ++e l+++   L k+ie L+ ++R+llG++Le++s+ eL+qLe+qLe+sl++iR++Kn+l++eqie+l+  ek l een++Lr
  SapurV1A.0282s0240.1.p  82 MGKDNMEPLKEDTFTLAKKIEHLEISKRKLLGDGLEPCSIDELNQLENQLERSLTRIRARKNQLFREQIEKLKGEEKILMEENTKLR 168
                             56788999999**************************************************************************** PP

                   K-box  96 kkl 98 
                             +k 
  SapurV1A.0282s0240.1.p 169 EKC 171
                             995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.973161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002655.06E-43371No hitNo description
SuperFamilySSF554556.8E-33373IPR002100Transcription factor, MADS-box
PfamPF003193.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-2783171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.36487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFST RGKLYEFSSS  60
SMNKTIERYQ KRAKDAGISS KMGKDNMEPL KEDTFTLAKK IEHLEISKRK LLGDGLEPCS  120
IDELNQLENQ LERSLTRIRA RKNQLFREQI EKLKGEEKIL MEENTKLREK CGMQPLDLSS  180
AKTPQGLQER QIVEVETELS IGPPKPQGLI NSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-20191189MEF2 CHIMERA
6byy_B4e-20191189MEF2 CHIMERA
6byy_C4e-20191189MEF2 CHIMERA
6byy_D4e-20191189MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0282s0240.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247930.0CU224793.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029143.11e-132PREDICTED: agamous-like MADS-box protein AGL19
RefseqXP_011029144.11e-132PREDICTED: agamous-like MADS-box protein AGL19
RefseqXP_011029145.11e-132PREDICTED: agamous-like MADS-box protein AGL19
RefseqXP_024461746.11e-132agamous-like MADS-box protein AGL19 isoform X1
RefseqXP_024461749.11e-132agamous-like MADS-box protein AGL19 isoform X1
SwissprotO827437e-82AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A2K2BW101e-130A0A2K2BW10_POPTR; Uncharacterized protein
STRINGEOY245831e-101(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-84AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]