PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0282s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 386aa    MW: 40383.2 Da    PI: 5.4776
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0282s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.72.6e-351042032102
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                             + ++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++   ++ +  + +s++
  SapurV1A.0282s0180.1.p 104 TIRRPTTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsVGGTLKIPTTTSNN 190
                             78999***********************************************************88888555322222222222222 PP

                     TCP  88 gkaaksaakskksqk 102
                             +++ ++++k++k  +
  SapurV1A.0282s0180.1.p 191 SNSLTETPKKRK--R 203
                             222222221111..1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-28109186IPR005333Transcription factor, TCP
PROSITE profilePS5136926.003110164IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASFQEHERG PDDEGGTSDL STSAGDPEDN RNSGSFSSNG CLKISTIDET EAFQVLPLKE  60
EPIDSDPSSD PDQRTNSMGG VPLAMQRQTP MSISMPMPVT TTATIRRPTT KDRHTKVEGR  120
GRRIRIPATC AARIFQLTRE LGHKSDGETV RWLLEHAEQA IIEATGTGTV PAIAVSVGGT  180
LKIPTTTSNN SNSLTETPKK RKRPSSSEFC DISEAAAVSI SQTSGLAPVT PTAPIAASAT  240
PQGLVPVYAV GNTGMMVPAN AFWMIPQAAT TDSPANQQIW ALSPSLNPVF NVAAARPISS  300
FVASANSENE TGVNTAAAAS VVNIPSEVEF RAPSPVVAST SVGAKVAKKS TMAPSLSSNS  360
GGGKGGKAQM LRDFSLEIYD KQELQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203PKKRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0282s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0036886e-48HM003688.1 Passiflora morifolia TCP1 (TCP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029153.10.0PREDICTED: transcription factor TCP9-like
TrEMBLB9GKQ50.0B9GKQ5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.18e-56TCP family protein