PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0277s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 280aa    MW: 31355.1 Da    PI: 7.6304
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0277s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.98.9e-3248103258
             ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                             ++v+YkeC++NhAas+Ggha DGCgEfmp  g++gt ++l+CaACgCHRnFHRre+ 
  SapurV1A.0277s0090.1.p  48 NAVKYKECMRNHAASIGGHANDGCGEFMPR-GDDGTRDSLTCAACGCHRNFHRRESG 103
                             5799*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-2950102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1850101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-2851101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08452101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.51E-19184252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-30184252IPR009057Homeodomain-like
TIGRFAMsTIGR015657.6E-27192248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDLSVVPYQQ QQHKSEAVHD QDVDMVLQTK PITAMIASPR TAKDPYKNAV KYKECMRNHA  60
ASIGGHANDG CGEFMPRGDD GTRDSLTCAA CGCHRNFHRR ESGTKRQHQQ LLLSPPPLQP  120
QQFLLYGAPT TKNMNAVHDF ISRPHDDDDD EDGLDDLDND RRSETPERGE VNVVGSGGRG  180
FMVKSTGGSS NKRFRTKFTQ EQKERMLEFA EKIGWRIQKH DDMALNQFCN EIGIKRNVLK  240
VWMHNNKNVH RRRDGVPPES AEAPPPPLPP SAQPQPVGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-271902481674ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0277s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376248.11e-151zinc-finger homeodomain protein 2
TrEMBLU5FSR81e-150U5FSR8_POPTR; Uncharacterized protein
STRINGPOPTR_0013s11330.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-53homeobox protein 22