PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0268s0160.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Trihelix | ||||||||
Protein Properties | Length: 296aa MW: 33274.1 Da PI: 9.5392 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 42.2 | 2.1e-13 | 19 | 95 | 2 | 74 |
trihelix 2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt +e+++Liea+r ++er rgk + +W++v ++++ s++qC++kw+nl ++ykk++++e+k +++ SapurV1A.0268s0160.2.p 19 WTVSETMVLIEAKRMDDERRMkrsdgaegRGKPTELRWKWVEDYCWN----QSQNQCNDKWDNLMRDYKKVRDHERKIAER 95 *************9666666522222222346999**********85....69***********************98544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.05 | 11 | 79 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 4.0E-8 | 18 | 91 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MMADQGGTVL IREYRKGNWT VSETMVLIEA KRMDDERRMK RSDGAEGRGK PTELRWKWVE 60 DYCWNQSQNQ CNDKWDNLMR DYKKVRDHER KIAERSGEGN EGSYWKLEKN ERKDKNLPSN 120 MLPQIYEALV EVVEKRGGGQ QRMLTAAGGS CSNPNTSFAV ERPITAVQPS VLPPLLQHQI 180 PAAPIPALPL PPPPPPPPPP PPPPPSQQPQ AQPPPPTQYP EPFPTVAQIL IQVSIQTRRQ 240 REGEEAAEVG KELAVALPVQ APQMKWAMPF PKVLPSLHKQ FRPVTREKKA GTEIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0268s0160.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208485 | 1e-167 | AC208485.1 Populus trichocarpa clone JGIACSB253-H05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438064.1 | 1e-145 | protein enabled homolog isoform X4 | ||||
TrEMBL | A0A3N7FU48 | 1e-144 | A0A3N7FU48_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s11820.1 | 4e-93 | (Populus trichocarpa) | ||||
STRING | XP_002515806.1 | 5e-93 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35640.1 | 2e-56 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0268s0160.2.p |