PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0258s0090.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 159aa MW: 17400.5 Da PI: 8.6708 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 131.3 | 1.2e-40 | 14 | 152 | 23 | 170 |
YABBY 23 avsvPst..s.lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsened 106 v++P + s +++vtvrCGhC++lls+n q+ hl++s k++ll ++ +e+++ s+st ++++ l+ +++ SapurV1A.0258s0090.3.p 14 HVNIPCSnnSiELNTVTVRCGHCANLLSLNTGSLLQTA----HLQDSHKQNLLYQDLSEGSQ---------SSSTGNKVSALEPSRN 87 46677431131479**************8877665543....44555555544444333332.........2222222333333333 PP YABBY 107 eevprvppv.irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e+ r+ v k+qr Psaynrfikeei+rika+nP+ishreafs aaknWah+P+ fgl SapurV1A.0258s0090.3.p 88 EQPGRTVAVhAAMGKKQQRTPSAYNRFIKEEIRRIKANNPEISHREAFSNAAKNWAHLPHTQFGL 152 33333333303456899**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.7E-48 | 13 | 152 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.71E-8 | 96 | 148 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.7E-6 | 105 | 148 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 7.55E-6 | 106 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MLQSPDCFLV VSVHVNIPCS NNSIELNTVT VRCGHCANLL SLNTGSLLQT AHLQDSHKQN 60 LLYQDLSEGS QSSSTGNKVS ALEPSRNEQP GRTVAVHAAM GKKQQRTPSA YNRFIKEEIR 120 RIKANNPEIS HREAFSNAAK NWAHLPHTQF GLTLNDTA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0258s0090.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443210.1 | 8e-83 | putative axial regulator YABBY 2 | ||||
Swissprot | Q10FZ7 | 2e-36 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A3N7G523 | 2e-81 | A0A3N7G523_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s06760.1 | 1e-87 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-39 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0258s0090.3.p |