PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0258s0090.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 168aa MW: 18470.8 Da PI: 8.393 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 171.7 | 4.7e-53 | 2 | 161 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPst..s.lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++ +se+vCyv+CnfCntil+v++P + s +++vtvrCGhC++lls+n q+ hl++s k++ll ++ +e+++ SapurV1A.0258s0090.2.p 2 SLEIASERVCYVHCNFCNTILVVNIPCSnnSiELNTVTVRCGHCANLLSLNTGSLLQTA----HLQDSHKQNLLYQDLSEGSQ---- 80 56789*********************651132479**************8877665543....44555555544444333332.... PP YABBY 86 vekeesastsvsseklsenedeevprvppv.irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+st ++++ l+ +++e+ r+ v k+qr Psaynrfikeei+rika+nP+ishreafs aaknWah+P+ fgl SapurV1A.0258s0090.2.p 81 -----SSSTGNKVSALEPSRNEQPGRTVAVhAAMGKKQQRTPSAYNRFIKEEIRRIKANNPEISHREAFSNAAKNWAHLPHTQFGL 161 .....222222233333333333333333303456899**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.1E-61 | 6 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-8 | 105 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 8.5E-6 | 114 | 157 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 9.14E-6 | 115 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSLEIASERV CYVHCNFCNT ILVVNIPCSN NSIELNTVTV RCGHCANLLS LNTGSLLQTA 60 HLQDSHKQNL LYQDLSEGSQ SSSTGNKVSA LEPSRNEQPG RTVAVHAAMG KKQQRTPSAY 120 NRFIKEEIRR IKANNPEISH REAFSNAAKN WAHLPHTQFG LTLNDTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0258s0090.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443210.1 | 1e-101 | putative axial regulator YABBY 2 | ||||
Swissprot | Q10FZ7 | 2e-49 | YAB2_ORYSJ; Protein YABBY 2 | ||||
Swissprot | Q7XIM7 | 1e-49 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A3N7G523 | 1e-100 | A0A3N7G523_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s06760.1 | 1e-106 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-49 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0258s0090.2.p |