PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0258s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 23968.2 Da PI: 8.9873 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 170.8 | 8.9e-53 | 49 | 208 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPst..s.lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++ +se+vCyv+CnfCntil+v++P + s +++vtvrCGhC++lls+n q+ hl++s k++ll ++ +e+++ SapurV1A.0258s0090.1.p 49 SLEIASERVCYVHCNFCNTILVVNIPCSnnSiELNTVTVRCGHCANLLSLNTGSLLQTA----HLQDSHKQNLLYQDLSEGSQ---- 127 567799********************651132479**************8877665543....44555555544444333332.... PP YABBY 86 vekeesastsvsseklsenedeevprvppv.irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+st ++++ l+ +++e+ r+ v k+qr Psaynrfikeei+rika+nP+ishreafs aaknWah+P+ fgl SapurV1A.0258s0090.1.p 128 -----SSSTGNKVSALEPSRNEQPGRTVAVhAAMGKKQQRTPSAYNRFIKEEIRRIKANNPEISHREAFSNAAKNWAHLPHTQFGL 208 .....222222233333333333333333303456899**********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.7E-61 | 53 | 208 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 8.51E-8 | 152 | 203 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-5 | 161 | 204 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.92E-5 | 162 | 205 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTCNRRHHLT TNHTAKTKDS KYLHLSKTVA CFLYKLVFID HLQSCPIMSL EIASERVCYV 60 HCNFCNTILV VNIPCSNNSI ELNTVTVRCG HCANLLSLNT GSLLQTAHLQ DSHKQNLLYQ 120 DLSEGSQSSS TGNKVSALEP SRNEQPGRTV AVHAAMGKKQ QRTPSAYNRF IKEEIRRIKA 180 NNPEISHREA FSNAAKNWAH LPHTQFGLTL NDTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0258s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443210.1 | 1e-101 | putative axial regulator YABBY 2 | ||||
Swissprot | Q7XIM7 | 1e-48 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A3N7G523 | 2e-99 | A0A3N7G523_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s06760.1 | 1e-106 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-48 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0258s0090.1.p |