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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0254s0130.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
GRAS |
| Protein Properties |
Length: 594aa MW: 65533.8 Da PI: 4.5994 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0254s0130.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 352.6 | 6.2e-108 | 227 | 593 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89
++L+ecA+ v+++ + a + L + +e +s++gdp++R+ +yf e+L +r+a + ++ l+ +++ s+e + ++k++++++P
SapurV1A.0254s0130.1.p 227 KALVECAQLVETKADQ-AVKSLIKFKESVSENGDPVERVGFYFIEGLCRRVAV---GEVDDLKNFDQT---SEEFTLSYKALNDACP 306
79*********96665.55667789***************************8...444445455554...89999*********** PP
GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelg 173
+ kf+hltaNqaIlea+e+++++Hi+Df+i qG+QW+aLlqaLa+R++g+p ++R+ g+ +p g + +l +tg+rL +fA+ l+
SapurV1A.0254s0130.1.p 307 YSKFAHLTANQAILEATEKASKIHIVDFGIVQGIQWAALLQALATRSAGKPvRIRVSGIPAPVLGknPAASLLATGNRLLEFAKLLD 393
***********************************************88777*********9988889999**************** PP
GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
++fef++ + + +++l+ + +rv+p+E laVn++lql++llde+ + + Lk+ ksl+Pk+v++ e e+ +n++ +l+rf +a
SapurV1A.0254s0130.1.p 394 LNFEFEP-ILTPIQELNKSCFRVEPDEDLAVNFMLQLYNLLDETPVAVE---TALKMAKSLNPKIVTLGEYEVGLNRAGYLTRFKNA 476
*******.799******************************99888877...9********************************** PP
GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
l+yy+a+f+s++ +++r+s+er vEr llg +i+ vv e+ rrer+e e+Wr +e +GF++v+ls++a++qa+ ll +++
SapurV1A.0254s0130.1.p 477 LRYYTAVFESIDPNMSRDSQERLQVERLLLGHRISGVVGPEEPGiRRERMEDRERWRVLMEGSGFESVSLSHYAMSQASILLWNYNy 563
****************************************99999*****************************************9 PP
GRAS 346 sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
s y+++++ sg l+l W++ pL++vS+Wr
SapurV1A.0254s0130.1.p 564 SSLYSLDDSqSGFLTLAWNEVPLLTVSSWR 593
999****76255666**************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 594 aa
Download sequence Send
to blast |
MAYMCADSGN LMAIAQQVIQ QKQQQEQQQQ QSHHHNQQQQ FLGLNPFSLN PWPSAAMSAN 60
PNLGYGITGP AAFSDLFQSG PDTGDPSGFS FSNMEHHSGE FRFPDFTGAG GEFDSDEWMD 120
SLMNGGDSTD SSNLPSGCDA WQNSADFGIY TSDPFNTCPS RLTVGCSPPS DLNRAISNSV 180
WADPSPQEIK PTTSPQPPPQ LPPPTVKKET VVVSKEIVEL SSSPVMKALV ECAQLVETKA 240
DQAVKSLIKF KESVSENGDP VERVGFYFIE GLCRRVAVGE VDDLKNFDQT SEEFTLSYKA 300
LNDACPYSKF AHLTANQAIL EATEKASKIH IVDFGIVQGI QWAALLQALA TRSAGKPVRI 360
RVSGIPAPVL GKNPAASLLA TGNRLLEFAK LLDLNFEFEP ILTPIQELNK SCFRVEPDED 420
LAVNFMLQLY NLLDETPVAV ETALKMAKSL NPKIVTLGEY EVGLNRAGYL TRFKNALRYY 480
TAVFESIDPN MSRDSQERLQ VERLLLGHRI SGVVGPEEPG IRRERMEDRE RWRVLMEGSG 540
FESVSLSHYA MSQASILLWN YNYSSLYSLD DSQSGFLTLA WNEVPLLTVS SWR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ511863 | 0.0 | KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds. |
