PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0248s0170.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 208aa MW: 23109.2 Da PI: 7.2505 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 236.6 | 5.7e-73 | 11 | 174 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.lleelkveeenlksnve 87 d+ ssseq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+l+svn++ + h + ++++ lee+++ ++ + ++ SapurV1A.0248s0170.2.p 11 DHLSSSEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLISVNMRSLLPAANQFYHGHGFFNPQnFLEEMRSGASS-N-LMI 95 7899******************************************99887766665555533334443355555544332.2.233 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++++ s+ ++ ee+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl SapurV1A.0248s0170.2.p 96 NQPNPNE--SV--VPIRGVEEIPKPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAENPDISHREAFSAAAKNWAHFPHIHFGL 174 3332222..22..3457789****999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.1E-71 | 15 | 174 | IPR006780 | YABBY protein |
CDD | cd01390 | 3.66E-6 | 114 | 164 | No hit | No description |
SuperFamily | SSF47095 | 6.41E-9 | 117 | 167 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.7E-5 | 122 | 168 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MSSSSATFSP DHLSSSEQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLISVNMR 60 SLLPAANQFY HGHGFFNPQN FLEEMRSGAS SNLMINQPNP NESVVPIRGV EEIPKPPVIN 120 RPPEKRQRVP SAYNRFIKDE IQRIKAENPD ISHREAFSAA AKNWAHFPHI HFGLMPDQPM 180 NVRQQDGEDV LMKDGFFAPA NVGVAPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0248s0170.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320712.1 | 1e-136 | axial regulator YABBY 1 | ||||
Swissprot | O22152 | 3e-87 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | B9IBX2 | 1e-134 | B9IBX2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s06210.1 | 1e-135 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-89 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0248s0170.2.p |