PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0248s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 23920.3 Da PI: 7.2093 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 222 | 1.7e-68 | 11 | 181 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.lleelkveeenlksnve 87 d+ ssseq+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+l+svn++ + h + ++++ lee+++ ++ + ++ SapurV1A.0248s0170.1.p 11 DHLSSSEQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLISVNMRSLLPAANQFYHGHGFFNPQnFLEEMRSGASS-N-LMI 95 7899******************************************99887766665555533334443355555544332.2.233 PP YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn.......WahfPkih 167 ++ ++++ s+ ++ ee+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaakn WahfP+ih SapurV1A.0248s0170.1.p 96 NQPNPNE--SV--VPIRGVEEIPKPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAENPDISHREAFSAAAKNcicclfqWAHFPHIH 178 3332222..22..3457789****999********************************************99999999******** PP YABBY 168 fgl 170 fgl SapurV1A.0248s0170.1.p 179 FGL 181 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 9.3E-67 | 15 | 181 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.59E-7 | 117 | 161 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 6.22E-5 | 128 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSSSSATFSP DHLSSSEQLC YVHCNFCDTV LAVSVPCTSL FKTVTVRCGH CTNLISVNMR 60 SLLPAANQFY HGHGFFNPQN FLEEMRSGAS SNLMINQPNP NESVVPIRGV EEIPKPPVIN 120 RPPEKRQRVP SAYNRFIKDE IQRIKAENPD ISHREAFSAA AKNCICCLFQ WAHFPHIHFG 180 LMPDQPMNVR QQDGEDVLMK DGFFAPANVG VAPF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0248s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320712.1 | 1e-133 | axial regulator YABBY 1 | ||||
Swissprot | O22152 | 7e-84 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | B9IBX2 | 1e-131 | B9IBX2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s06210.1 | 1e-132 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2040 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-86 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0248s0170.1.p |