PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0247s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family AP2
Protein Properties Length: 546aa    MW: 59922.8 Da    PI: 8.1947
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0247s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.3e-10161192137
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfg 37 
                             s+y+GV++++++grW+++I+d      + k+++lg+f 
  SapurV1A.0247s0170.1.p 161 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGNFK 192
                             78*******************......55******995 PP
2AP241.82.6e-13296346155
                     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  SapurV1A.0247s0170.1.p 296 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 346
                             89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.328162261IPR001471AP2/ERF domain
SMARTSM003802.5E-20162267IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-7228263IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.6E-9231262IPR001471AP2/ERF domain
PfamPF008476.2E-9296346IPR001471AP2/ERF domain
CDDcd000182.52E-25296356No hitNo description
SuperFamilySSF541711.37E-16296355IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-15297354IPR001471AP2/ERF domain
SMARTSM003801.4E-31297360IPR001471AP2/ERF domain
PROSITE profilePS5103215.514297354IPR001471AP2/ERF domain
PRINTSPR003676.4E-6298309IPR001471AP2/ERF domain
PRINTSPR003676.4E-6336356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MLDLNLTAVS GDSSTTVKRN NNSNKKILEL SNSPMESSGS FNSSSVVNAD GCGDEDSCSN  60
GEVFALNFSI LANESSSKKT VYSNNNDDDH SDRGDRTIQL FPVECGTKNA GGGSTSSPAV  120
QMQRMDLGGS LNYGVPPEQG IGAQQQKPVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW  180
DCGKQVYLGN FKIILFVYLK LTLIHWCYGV QLILANLVFI YFVNLGVWFL VGGFDTAHAA  240
ARAYDRAAIK FRGVDADINF NVSDYDEDIK QMSNFTKEEF VHILRRQSTG FSRGSSKYRG  300
VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE IEAARAYDKA AIKCNGREAV TNFEPSTYEV  360
EMLSEPNSGV TYTDGNQNLD LNLGIAPPDT SDILKVNSNV GGFYFHSGWD GVSTDRAPKF  420
LNSGSATMKN QLPNGPGVTS VHPPPMWDGL NHRVFPIYEE RAIEKRMEVD SFPNWTRQTQ  480
VPYGGGANAL PVFSTAASSG FASSAIMAPS AAAGQLHFSS STTLHHRNSS SVTNPSNISQ  540
FYCRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0247s0170.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322849.20.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AMA92e-94AP22_ORYSI; APETALA2-like protein 2
SwissprotQ8H4432e-94AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A2K1XCT20.0A0A2K1XCT2_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-96related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]