PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0230s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 582aa    MW: 63148.1 Da    PI: 4.8838
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0230s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS42.97.6e-14237295159
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvse 59 
                             lv++Ll+cAea+++++l+ a+al + +  las+++ +m+++a yf+eALa+r+++  ++
  SapurV1A.0230s0190.1.p 237 LVHTLLACAEAIQQENLKFADALFKLIGPLASSQAGAMRKVARYFAEALARRIYKIFPQ 295
                             689**************************************************997665 PP
2GRAS353.63.1e-108298570101374
                    GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                              Ilea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+
  SapurV1A.0230s0190.1.p 298 SILEAFANASRVHVIDFGLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVKFEFRGFVANSLA 384
                             69************************************************************************************* PP

                    GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                             dle e L+++p   Ea+aVn+v++lhrlld+++++++    vL  +k ++Pk+v++veqea+hn++ Fl+rf eal+yys+lfdsle
  SapurV1A.0230s0190.1.p 385 DLEAEILDLRPpeVEAVAVNSVFELHRLLDRPGDIDK----VLGSIKAMRPKIVTIVEQEANHNGPVFLDRFNEALHYYSSLFDSLE 467
                             ***********9899**************99999999....*********************************************8 PP

                    GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                              +  +  +++ ++++ +lgr+i+nvva egaer+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l
  SapurV1A.0230s0190.1.p 468 GSGLTPPSQDLVMSELYLGRQICNVVAYEGAERVERHETLAQWRTRFGSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCL 554
                             77666668999999************************************************************************* PP

                    GRAS 359 vlgWkdrpLvsvSaWr 374
                             +lgW++rpL+++SaWr
  SapurV1A.0230s0190.1.p 555 MLGWHTRPLIATSAWR 570
                             ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120415.7E-3546111IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.3E-3546117No hitNo description
PROSITE profilePS5098551.465181549IPR005202Transcription factor GRAS
PfamPF035142.6E-11237295IPR005202Transcription factor GRAS
PfamPF035141.1E-105298570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MKREHQETIG GAGSSNGNKA ESSSSSMATG KGKLWVEDDQ DAGGMDELLA VLGYKIKSSE  60
MADVAQKLEQ LEMVLGSEDG FSHLASDTVH YNPSDLSGWV QNMLSEFNNL PSTDLDSSIL  120
LSKNQDSQPS TITSLDFSNN SQSKVFVDDS EYDLRAIPGV AAYPQKEFDK SNDRKRMKLT  180
PDGSNTAPAL AVNSLQSSNS SCSPSSSQQA IMAVSGTLSE PTRPVVLIDS QETGVHLVHT  240
LLACAEAIQQ ENLKFADALF KLIGPLASSQ AGAMRKVARY FAEALARRIY KIFPQDYSIL  300
EAFANASRVH VIDFGLKQGM QWPALIQALA LRPGGPPAFR LTGIGPPQPD NTDALQQVGW  360
KLAQLAQTIG VKFEFRGFVA NSLADLEAEI LDLRPPEVEA VAVNSVFELH RLLDRPGDID  420
KVLGSIKAMR PKIVTIVEQE ANHNGPVFLD RFNEALHYYS SLFDSLEGSG LTPPSQDLVM  480
SELYLGRQIC NVVAYEGAER VERHETLAQW RTRFGSAGFD PVHLGSNAFK QASMLLALFA  540
GGDGYRVEEN NGCLMLGWHT RPLIATSAWR PAAGDSQLPS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5724457126380Protein SCARECROW
5b3h_A1e-5724457125379Protein SCARECROW
5b3h_D1e-5724457125379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0230s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383329.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLU5GFQ30.0U5GFQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0005s14540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2