PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0228s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HSF | ||||||||
Protein Properties | Length: 228aa MW: 26468 Da PI: 7.442 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.5 | 8.6e-33 | 19 | 110 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl k+y ++ed +++++isw+ +g+ fvv+++ ef++++Lpk Fkhsnf+SFvRQLn+YgF+kv +++ weF ++ F+k SapurV1A.0228s0170.1.p 19 FLLKTYMLVEDLATDDVISWNGEGTGFVVWQPAEFSRDLLPKLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNDMFRK 96 9****************************************************************999.........********** PP XXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkks 102 g+++ll +i+r+k SapurV1A.0228s0170.1.p 97 GERDLLLQIRRRKA 110 ***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-35 | 12 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.1E-49 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-31 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.0E-29 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-18 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-18 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.5E-18 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MADEKGLLEY VRKSTPPPFL LKTYMLVEDL ATDDVISWNG EGTGFVVWQP AEFSRDLLPK 60 LFKHSNFSSF VRQLNTYGFR KVATSRWEFC NDMFRKGERD LLLQIRRRKA WSKQPTAPFQ 120 VTPEEFEEED QRSSSTLSSS EYTTLVDENK RLKKENGFLS SELTSMKGKC RELLDLVAEH 180 AHLEKEEEND RPKLFGVRLE GEGERERKRK RAEIRESAAI FLSQSCK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d8k_B | 1e-20 | 17 | 113 | 3 | 110 | Heat shock factor protein 2 |
5d8l_B | 1e-20 | 17 | 113 | 3 | 110 | Heat shock factor protein 2 |
5d8l_D | 1e-20 | 17 | 113 | 3 | 110 | Heat shock factor protein 2 |
5d8l_F | 1e-20 | 17 | 113 | 3 | 110 | Heat shock factor protein 2 |
5d8l_H | 1e-20 | 17 | 113 | 3 | 110 | Heat shock factor protein 2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0228s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU233322 | 1e-178 | CU233322.1 Populus EST from severe drought-stressed opposite wood. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048077.1 | 1e-136 | PREDICTED: heat stress transcription factor B-3 | ||||
Swissprot | O22230 | 4e-67 | HSFB3_ARATH; Heat stress transcription factor B-3 | ||||
TrEMBL | B9II85 | 1e-133 | B9II85_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s05680.1 | 1e-134 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1592 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41690.1 | 4e-65 | heat shock transcription factor B3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0228s0170.1.p |