PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0225s0140.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 934aa    MW: 110018 Da    PI: 6.3669
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0225s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06218237625
                             -SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                             C+f+++tG C++G rC++ H
  SapurV1A.0225s0140.1.p 218 CPFHLKTGACRFGQRCSRVH 237
                             ******************99 PP
2zf-CCCH27.65e-09347374126
                             --S---SGGGGTS..--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                             +k ++C  f+++   tC++G+ C+F+H+
  SapurV1A.0225s0140.1.p 347 WKVAICGEFMKSRlkTCSHGSACNFIHC 374
                             899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.23212240IPR000571Zinc finger, CCCH-type
SMARTSM003563.4213239IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4217237IPR000571Zinc finger, CCCH-type
PRINTSPR018482.2E-37218237IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.2E-37237257IPR009145U2 auxiliary factor small subunit
Gene3DG3DSA:3.30.70.3301.7E-26243342IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.121244344IPR000504RNA recognition motif domain
CDDcd125407.96E-48245343No hitNo description
SMARTSM003600.0015245340IPR000504RNA recognition motif domain
SMARTSM003613.5E-7268340IPR003954RNA recognition motif domain, eukaryote
PRINTSPR018482.2E-37273288IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549287.06E-17275344IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018482.2E-37301323IPR009145U2 auxiliary factor small subunit
PRINTSPR018482.2E-37328352IPR009145U2 auxiliary factor small subunit
SMARTSM003560.051346375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311346376IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6347374IPR000571Zinc finger, CCCH-type
PRINTSPR018482.2E-37366378IPR009145U2 auxiliary factor small subunit
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MTAKEEEEEE EEEEEEETAA TSRKAKRKEK KKLKRKQVRR EIAEKEREEE ERRLNDPEEQ  60
RRWKEMEEEE KERMERERKE FEERERLWME VMERKRKEEE EEEEERRKIL EEKAEEDGKD  120
NGCDEDDDWE YIEEGPAEII WQENEIIVRK KKVRVPKKNA DRQGTKEDAD RPTSNPLPPQ  180
SEAFTEHQNA SIVSAQQMLE NVAQQVPNFG TEQDKAHCPF HLKTGACRFG QRCSRVHFYP  240
DKSCTLLIKN MYNGPGLAWE QDEGLEYTDE EVEHSYEEFY EDVHTEFLKY GEIVNFKVCK  300
NGSFHLRGNV YVHYKSLDSA ILAHHSINGR YFAGKQIKCE FINLTRWKVA ICGEFMKSRL  360
KTCSHGSACN FIHCFRNPGG DYEWADWDRP APRYWLEKMA SLFGYSAESL FEKQTVEEKL  420
RQTRISSNML TADRDRHDRM RRSRSRGMDH AIHSSHKSGD IEDDFPEGTQ WRSHSKDDGS  480
NSDGRQSDRD TERERYRDRY RHRYHARKRS KHHSKVSERS PDYRENNSRS HEIDQNEELS  540
DDGRIRHEHF GSTKSSGHWT RTFVDDDKDS KDETLRMDAY RLDRDIKREK SRNHTGKSSR  600
HQSRVRSPDD HGDDGRRTLD IDPSREGFPR DRDRRHHIRK SLGNQNNVLE FPDDHQDNGS  660
RTYGTNSSND MLNRDRVRHF GRGRKHSEHS EPEFSDDEGA SVKRLKGKSL VGKSDITKSN  720
LQINPTGGRN YSSKETVDVN SPVESHKPDR NHVYGQVKKC SGRWESNSPG SRYNFSEEID  780
EQDRWEPESS EKDHDFKRTS VSVDSYESGS LCDRRSESYD KNSDYSHDEK METDAWEYET  840
GASGKHHKSR SDLTVGDDKY AGTSSFLDKT SSELYNESKP WSSKWTRHKR NPKCLEEGRD  900
SPKESPEKEK KIENQHAKLR SLRPGQDDKE YNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yh8_A4e-312093739167Splicing factor U2AF 23 kDa subunit
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12634RKEKKKLKR
22936KKKLKRKQ
3492502RERYRDRYRHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0225s0140.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455150.10.0zinc finger CCCH domain-containing protein 5 isoform X1
SwissprotQ9SY740.0C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A3N7EV750.0A0A3N7EV75_POPTR; Uncharacterized protein
STRINGXP_008218649.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-149C3H family protein
Publications ? help Back to Top
  1. Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W
    Pre-mRNA splicing in higher plants.
    Trends Plant Sci., 2000. 5(4): p. 160-7
    [PMID:10740297]
  2. Domon C,Lorković ZJ,Valcárcel J,Filipowicz W
    Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants.
    J. Biol. Chem., 1998. 273(51): p. 34603-10
    [PMID:9852132]