PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0222s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 603aa    MW: 65991 Da    PI: 8.1874
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0222s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1061.9e-33258315260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  SapurV1A.0222s0350.1.p 258 DDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGSHNHPK 315
                             8****************************************.***************85 PP
2WRKY1061.9e-33433491159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  SapurV1A.0222s0350.1.p 433 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFQGCPVRKHVERASHDLRAVITTYEGKHNHD 491
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-29244316IPR003657WRKY domain
SuperFamilySSF1182903.01E-25252316IPR003657WRKY domain
PROSITE profilePS5081124.019252316IPR003657WRKY domain
SMARTSM007743.9E-36257315IPR003657WRKY domain
PfamPF031063.1E-25258314IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37418493IPR003657WRKY domain
SuperFamilySSF1182901.7E-29425493IPR003657WRKY domain
PROSITE profilePS5081138.377428493IPR003657WRKY domain
SMARTSM007741.3E-39433492IPR003657WRKY domain
PfamPF031068.1E-26434491IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MAASSGSLDT SGNSHPQSSS NYFSFSTNSS NHYPFMTSSS FTDLLVSNDE KTISSTTRNS  60
KLADRIAERT GSGVPKFKSI PPPSLPLSPP PVSPSYYFAI PPGLSPTELL DSPVLINPSN  120
ILPSPTTGSF PGQGLNWKSS SGNTQKNVKK EDGNFSDFSF QQPARPSTTS SAMFQSSNST  180
VQPGQQQTWG FQEPAKQDEF VSGKSNMVKM EYNSNSIKNF SPEIAAIQAN PQSNNGFQSD  240
YGNQQQQYQS VREQKRSDDG YNWRKYGQKQ VKGSENPRSY YKCTFPSCPT KKKVERSLDG  300
QITEIVYKGS HNHPKPQSTR RSSSTGSAAS NLAMIPAPNS NSNEIQDQSY VTHCSGQMDS  360
SVATPENSSI SIGDDDFDSQ RSKSMGGDDL EEDEPEAKRW KRERDNEGIS APGSRTVREP  420
RVVVQTTSDI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT FQGCPVRKHV ERASHDLRAV  480
ITTYEGKHNH DVPAARGSGS RSLQDHSNNG NNNGSNNAAM AVRPSTVNHV SNNSINNPTR  540
NQGAPPSTTS EGDMPFTLEM LQSPGSFGFS GFGSLMGSYM NQSSTDEVLS RAKRELEVES  600
FW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36249494878Probable WRKY transcription factor 4
2lex_A3e-36249494878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0222s0350.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774210.0GQ377421.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021007.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotQ6B6R41e-133WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLC9DHZ00.0C9DHZ0_9ROSI; WRKY transcription factor 1
STRINGPOPTR_0013s14960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-106WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]