PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0222s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 734aa    MW: 80291.7 Da    PI: 8.6323
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0222s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-11681729247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                             +rW++eE++ l + vk++G+g+Wk+I +      + Rt+ ++k++w++ 
  SapurV1A.0222s0230.1.p 681 KRWSQEEEDALRESVKKYGKGNWKLIWNSRRdvfQERTEVDLKDKWRNM 729
                             69*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.049675733IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-12676731IPR009057Homeodomain-like
SuperFamilySSF466898.97E-14677731IPR009057Homeodomain-like
SMARTSM007171.8E-7679732IPR001005SANT/Myb domain
PfamPF002492.1E-8681729IPR001005SANT/Myb domain
CDDcd116602.74E-18681731No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MNKSVQISKH SSIFPLHLCL SNFLPIFLNP KKTLISSQSL CKNPEKMSSM AATTGGRSFD  60
SDITRWVIEF ILRQLQTPVL TITKILTNRH VPLSNTSPRL KKSILLRQID ADIEDGSVSE  120
KTLDAIETVE QIDRNEGDLI MDSMKNAYCA VAVECTVKYM LGNLQRARKG KFLEAVERVW  180
KQRVGGLKRE GRSELVTGKL MKCFEEMEVA LKDDGVAKRW LKRNTRNEAV EMVRVYLGEA  240
VAVSGPVFVE MVASMEMRGD GGLLCRKRGE GENEGVDVNL GGGEVNGLTE KSREGGGGEN  300
GVAGVNGGGG RVCIDVDAGE GCSRLADGNQ ELGPADMPAK ESREGEGGEN GAMEVNVGGG  360
RVCIDANAGE GFLRSDDENL ELGPADKPAK KSSEIQKNNM VRKHRHVVPI KRSKGPVKIT  420
NTETSSGDVA SSLYDTITTD EVNKVRGKLI ASSKELRARV KDPLPATLKQ TENLMAEMAR  480
NLSNQGTLAE IQSGKGLDTV ISELARKIIN PDPPGKKQNE KNAGSSFLSA NQTAVPSAQN  540
QCGKDTDACK PLANHTVEPF AENSNQSEAD AANHFTNQPA VPSTRNEKGK GVDAPNLSAN  600
LSKEANAGVA SCSHQNNVSK PSLMERNATA RTFEWDDSID DSSEGTGDQM NRIHLDSPKR  660
RAVSPLKKYE LARIAKRRKP KRWSQEEEDA LRESVKKYGK GNWKLIWNSR RDVFQERTEV  720
DLKDKWRNMT RYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1658678KRRAVSPLKKYELARIAKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0222s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376552.20.0uncharacterized protein LOC7464725 isoform X1
TrEMBLA0A2K1Y6380.0A0A2K1Y638_POPTR; Uncharacterized protein
STRINGPOPTR_0013s15060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-22MYB_related family protein