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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | SapurV1A.0220s0460.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family | G2-like | ||||||||
| Protein Properties | Length: 337aa MW: 36777.1 Da PI: 6.5904 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 107.8 | 6e-34 | 49 | 103 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
SapurV1A.0220s0460.1.p 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 15.303 | 46 | 106 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 8.24E-18 | 48 | 103 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 1.9E-32 | 48 | 104 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.3E-25 | 49 | 104 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.4E-9 | 51 | 102 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 1.8E-23 | 135 | 181 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 337 aa Download sequence Send to blast |
MCQLESIPSS SLVHKNSLVN DQHLDSDDMT MDPINGGSSL NNNPSHASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK 120 ETGDMISNLD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ 180 RLSGVLEDVP GSGIAAPVSG DNCPESDSKT DPATPAPTSE SPLQDKAAKE RAPAKSLSID 240 ESFSSQHEPL TPDSRCNAGS PTESPRGERS MKKQRVSMGV TYGKPELVLA HQILESSLNS 300 YPQPHSAFLS REQFDPSSGL STGSKDQMEK VTGSDL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-23 | 49 | 106 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-23 | 49 | 106 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00252 | DAP | Transfer from AT2G01060 | Download |
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| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | SapurV1A.0220s0460.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | CU224847 | 0.0 | CU224847.1 Populus EST from leave. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006380859.2 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_024459395.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_024459396.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Refseq | XP_024459397.1 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
| Swissprot | Q9SJW0 | 1e-138 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
| TrEMBL | A0A2K1ZUI1 | 0.0 | A0A2K1ZUI1_POPTR; Uncharacterized protein | ||||
| STRING | XP_002525238.1 | 0.0 | (Ricinus communis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF8610 | 33 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 1e-115 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | SapurV1A.0220s0460.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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