PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0218s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 286aa MW: 33191.3 Da PI: 9.4054

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0218s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.8	3.1e-47	11	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 pGfrFhPt+eel+++yLk+ v gk+++l +vi ++iy+++PwdLp + +e+ewyfF++rd+k +g r+nr+t++g+Wkatg+d SapurV1A.0218s0020.1.p 11 PGFRFHPTEEELLDFYLKNIVFGKQMRL-DVIGYLNIYRHDPWDLPGLSNVGEREWYFFVPRDRKPGNGGRPNRTTQNGFWKATGSD 96 9************************9.99***********8777899****************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++s ++ +gl+ktLvfykgrap+g ktdWvm+eyrl SapurV1A.0218s0020.1.p 97 RKIVSFsdPKRMIGLRKTLVFYKGRAPRGCKTDWVMNEYRL 137 997666778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	53.877	9	156	IPR003441	NAC domain
SuperFamily	SSF101941	8.24E-56	10	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MSEMALKLDL PGFRFHPTEE ELLDFYLKNI VFGKQMRLDV IGYLNIYRHD PWDLPGLSNV 60 GEREWYFFVP RDRKPGNGGR PNRTTQNGFW KATGSDRKIV SFSDPKRMIG LRKTLVFYKG 120 RAPRGCKTDW VMNEYRLPEY SRPLPKDLVL CKIYRKATSL KVLEQRAAME DEMKTIHASP 180 SSSPPPPSLD TMPFCRLLED PVPPISLPAQ HLVFKKEIED DSNIRYEKPN EIRTPRLQLP 240 PGKDRLPELH VPSKLNMEWN QDPIWSLNSP WLLQNPALYA DILNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	11	161	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	11	161	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	11	161	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	11	161	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-45	11	161	22	173	NAC domain-containing protein 19
3swm_B	1e-45	11	161	22	173	NAC domain-containing protein 19
3swm_C	1e-45	11	161	22	173	NAC domain-containing protein 19
3swm_D	1e-45	11	161	22	173	NAC domain-containing protein 19
3swp_A	1e-45	11	161	22	173	NAC domain-containing protein 19
3swp_B	1e-45	11	161	22	173	NAC domain-containing protein 19
3swp_C	1e-45	11	161	22	173	NAC domain-containing protein 19
3swp_D	1e-45	11	161	22	173	NAC domain-containing protein 19
4dul_A	1e-45	11	161	19	170	NAC domain-containing protein 19
4dul_B	1e-45	11	161	19	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0218s0020.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU224883	0.0	CU224883.1 Populus EST from leave.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313680.2	1e-178	NAC domain-containing protein 22
Swissprot	Q10S65	3e-91	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2K1Z7R9	1e-177	A0A2K1Z7R9_POPTR; Uncharacterized protein
STRING	POPTR_0009s14370.1	1e-177	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6214	32	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-100	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	SapurV1A.0218s0020.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]