PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0217s0100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 193aa MW: 21143.9 Da PI: 8.1611 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 230 | 5.9e-71 | 2 | 159 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 +++ se vCyv+CnfCntilavsvPs+slf++vtvrCGhC +llsvn+ +sq+l+ ++ + ++ +l + ++ ++++ s + SapurV1A.0217s0100.1.p 2 SLDMVSEPVCYVHCNFCNTILAVSVPSSSLFNIVTVRCGHCGNLLSVNMGASSQTLPLQDP---QSQKLVLLNSEDLNKDFGSSSKC 85 567889****************************************************996...33333444444444444433222 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ ++ e++e pr+pp irPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aaknWahfP+ihfgl SapurV1A.0217s0100.1.p 86 N-------KVNASESTEHHEPPRMPP-IRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGL 159 1.......122223456788999999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-73 | 6 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 6.81E-8 | 104 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.4E-4 | 108 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSLDMVSEPV CYVHCNFCNT ILAVSVPSSS LFNIVTVRCG HCGNLLSVNM GASSQTLPLQ 60 DPQSQKLVLL NSEDLNKDFG SSSKCNKVNA SESTEHHEPP RMPPIRPPEK RQRVPSAYNR 120 FIKDEIQRIK AGNPDISHRE AFSTAAKNWA HFPHIHFGLK LDSNKHAKLD HPSIAGDGAQ 180 KTSGLYEING SL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0217s0100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147402 | 0.0 | EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453762.1 | 1e-129 | axial regulator YABBY 5 isoform X3 | ||||
Swissprot | Q9XFB0 | 7e-75 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A9PGB2 | 1e-128 | A9PGB2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s22180.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-67 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0217s0100.1.p |
Publications ? help Back to Top | |||
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