PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0216s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92492.7 Da    PI: 6.007
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0216s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox566.8e-182785357
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  SapurV1A.0216s0190.1.p 27 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaDIEPKQIKVWFQNRRCREKQ 85
                            5679*****************************************************97 PP
2START152.24.3e-481653732205
                             HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT CS
                   START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg 88 
                             +aee++ e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++    +e+l+d++ W ++++  e+      g
  SapurV1A.0216s0190.1.p 165 IAEETLSEFLSKATGTAVEWVQMPGMKPGPDSIGIFSISQSCSGVAARACGLVSLEPN-KIAEILKDRPSWFRDCRNLEVFTMFPAG 250
                             7899******************************************************.7777777777*******99999999988 PP

                             ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
                   START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwveh 169
                               g+++l +++ +a+++l+p +d +++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h
  SapurV1A.0216s0190.1.p 251 ngGTIELVYSQIYAPTTLAPaQDMWTLRYTTSLDNGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRPCEEGGSIIHVVDH 337
                             88********************************************99999998999****************************** PP

                             EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                   START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                              +l++++++++lr+l++s+ a + k++ atl++ ++
  SapurV1A.0216s0190.1.p 338 LNLQAWSVPEVLRPLYESSKALAHKMTIATLRYVRQ 373
                             *******************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-181085IPR009057Homeodomain-like
PROSITE profilePS5007115.242286IPR001356Homeobox domain
SMARTSM003893.4E-152490IPR001356Homeobox domain
SuperFamilySSF466894.11E-162588IPR009057Homeodomain-like
CDDcd000861.59E-152787No hitNo description
PfamPF000462.0E-152885IPR001356Homeobox domain
CDDcd146861.09E-579118No hitNo description
PROSITE profilePS5084823.599155369IPR002913START domain
CDDcd088753.60E-66159375No hitNo description
Gene3DG3DSA:3.30.530.202.1E-16164362IPR023393START-like domain
SuperFamilySSF559614.26E-31164375No hitNo description
SMARTSM002348.5E-40164374IPR002913START domain
PfamPF018523.2E-45165373IPR002913START domain
PfamPF086705.2E-50700843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MAMQVAPVHR ESSSSGSITK HLTDNGKYVR YTAEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILADIEPK QIKVWFQNRR CREKQRKESS RLQIVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VCENGFMQQQ LQTAPTATDA RCESVVATPQ HSLRDANNPA GLLSIAEETL SEFLSKATGT  180
AVEWVQMPGM KPGPDSIGIF SISQSCSGVA ARACGLVSLE PNKIAEILKD RPSWFRDCRN  240
LEVFTMFPAG NGGTIELVYS QIYAPTTLAP AQDMWTLRYT TSLDNGSLVV CERSLSGSGA  300
GPNAAAAAQF VRAEMLPSGY LIRPCEEGGS IIHVVDHLNL QAWSVPEVLR PLYESSKALA  360
HKMTIATLRY VRQIAHETSG EAVYGLGREP AVLRIFNQRL SRGFNDAING FNDDGWSLMN  420
ADGAEDVMIA VNSTKNLIGA NNPAHSHSFL GGIICAKASM LLQNVVPAVL ICFLREHRAE  480
WADFSVDAYS AALWKAGSYA YPGMRPMRFT GSQITMPLGH TIEKEELLEV IRLEGHSLAQ  540
EDTFVSQDIH LLQICSGIDE SAVGACSELI FAPIDEMFPD DAPLLPSGFR IIPLESKTKD  600
TQEVLTTNRT LDLTSSLEVG PAINHAAVDG SSCHSLRSVL TIAFQFPFES NMQDSVATMA  660
RQYIRSVISS VQRVAMAISP SGLSPVLGPK LSAGSPEALT LAHWICQSYS YHLGAELLRS  720
DSVGGDSVLK NLWHHPDAIL CCSLKSLPVF IFANQAGLDM LETTLVALQD ITLDKIFDES  780
GRKALYTEFA KLMQQGFACL PAGICMSTMG RNASYEQAAA WKVLSAEENA VHCIAFSFVN  840
WSFL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0216s0190.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196170.0AY919617.1 Populus trichocarpa class III HD-Zip protein 2 (HB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455683.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2K2AY010.0A0A2K2AY01_POPTR; Uncharacterized protein
STRINGPOPTR_0004s22090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]