PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0214s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 305aa    MW: 33840.4 Da    PI: 6.9478
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0214s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000185577123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ F++   L  H+++H
  SapurV1A.0214s0320.1.p 55 YSCSFCKREFRSAQALGGHMNVH 77
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-65281No hitNo description
PfamPF139123.4E-65478IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.245582IPR007087Zinc finger, C2H2
SMARTSM003550.0065577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEQAQYWLWM KRKQLLKSQL EAATDSRLNG SWEEKAFAED ASGNLGGCIW PARYYSCSFC  60
KREFRSAQAL GGHMNVHRRD RARLKQSLTL SPRNDVFQHQ NHIQSSHKSS GSHFPTDVCN  120
LENYDLDPKL ISVPGAINYN ASTLSSSRFS AFSTHEKFSD HAFVSPFSSY FEQEQHKGYP  180
YVHNNLSGSD HSLANDSESK PGAEKNQGKV DSTSSRHDNF IASDLFMGLS SAINSQISLS  240
SPGSCVNYEA SSCREPQTNV SVLSLLIMPR SNDGYIQSEA VGPNSSSKED IDLELRLGEP  300
PKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-115077229superman protein
2l1o_A2e-115077229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0214s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4445462e-38AM444546.2 Vitis vinifera contig VV78X197403.26, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311181.11e-176uncharacterized protein LOC7487976
TrEMBLB9HML01e-174B9HML0_POPTR; Uncharacterized protein
STRINGPOPTR_0008s05930.11e-175(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.14e-24C2H2 family protein