PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0213s0330.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 557aa    MW: 61890 Da    PI: 4.493
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0213s0330.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.78.2e-52101371128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             l+pGfrFhPtdeelv +yLk+kv++k+++l ++i+ +d+yk+ePwdLp k k+k+++ ewyfFs  dkky +g ++nrat++gyWk+
  SapurV1A.0213s0330.1.p  10 LAPGFRFHPTDEELVRYYLKRKVTNKPFRL-DAISVTDVYKSEPWDLPvKsKLKSRDLEWYFFSMLDKKYGNGAKTNRATEKGYWKT 95 
                             579***************************.99***************5347777777***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tgkd++v+  ++++vg+kktLv+++grap+ge+++Wvmheyrl
  SapurV1A.0213s0330.1.p  96 TGKDRPVHW-NSRVVGMKKTLVYHQGRAPRGERSNWVMHEYRL 137
                             ********9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-608160IPR003441NAC domain
PROSITE profilePS5100557.24410160IPR003441NAC domain
PfamPF023651.1E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MGSSDSATSL APGFRFHPTD EELVRYYLKR KVTNKPFRLD AISVTDVYKS EPWDLPVKSK  60
LKSRDLEWYF FSMLDKKYGN GAKTNRATEK GYWKTTGKDR PVHWNSRVVG MKKTLVYHQG  120
RAPRGERSNW VMHEYRLVDE ELEKAGIAQD AFVLCRIFQK SGTGPKNGEQ YGAPFIEEEW  180
EDDEVPLLPS EEMVPTGEAP AGDGSYLELN ELDQNFDSGI TSENTALPLN FYYGETSNYV  240
EHPSNFSDDI KPVIRGVENR YGPAPPADQN MDLPGQYDVD ADKKEHIAEP INSVNAVGAN  300
YLFDESYLDA LDDLPQSEGF FLEANELSKP VDPETVAASS GFDMLEDYLN FFEAVNENMS  360
FDPSDIFGRE TAVSDQQLPP QEDVKGQTEE MSEASQNLSE IHGTIDPSSS KQKPEALKFD  420
SGADVKNSFI KQASHRLGNI PAPPAFASEF PSKDAVLRLH PASSSSINVT AGMIRIENMS  480
LGGNGMEWSF GKNGNVNIIL SFGLPQQGGP DCLVPMNSLF RGKTESVVSR GWLYLIFFWV  540
LVLSVSYKIG TSICAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-44616613171NO APICAL MERISTEM PROTEIN
1ut4_B8e-44616613171NO APICAL MERISTEM PROTEIN
1ut7_A8e-44616613171NO APICAL MERISTEM PROTEIN
1ut7_B8e-44616613171NO APICAL MERISTEM PROTEIN
3swm_A9e-44616616174NAC domain-containing protein 19
3swm_B9e-44616616174NAC domain-containing protein 19
3swm_C9e-44616616174NAC domain-containing protein 19
3swm_D9e-44616616174NAC domain-containing protein 19
3swp_A9e-44616616174NAC domain-containing protein 19
3swp_B9e-44616616174NAC domain-containing protein 19
3swp_C9e-44616616174NAC domain-containing protein 19
3swp_D9e-44616616174NAC domain-containing protein 19
3ulx_A1e-4341609168Stress-induced transcription factor NAC1
4dul_A8e-44616613171NAC domain-containing protein 19
4dul_B8e-44616613171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0213s0330.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2246300.0CU224630.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315338.20.0NAC domain-containing protein 78 isoform X1
SwissprotQ84K001e-167NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A2I4KK980.0A0A2I4KK98_POPTR; NAC family protein
STRINGPOPTR_0010s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53473247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-163NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]