PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0208s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 442aa    MW: 49758.5 Da    PI: 4.8001
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0208s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.57.1e-36161082103
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d++l+ +isw ++g+sfvv+d+ efa+ vLp+ Fkh+nf+SFvRQLn+YgF+k+++++         weF+++sF++
  SapurV1A.0208s0230.1.p  16 FLSKTYDLVDDRTLDPIISWGSTGESFVVWDPAEFARLVLPRNFKHNNFSSFVRQLNTYGFHKIDNDR---------WEFANESFRR 93 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkkse 103
                             g+k+ll++i+r++s+
  SapurV1A.0208s0230.1.p  94 GEKRLLKNIHRRRST 108
                             ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467859.52E-3612105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5712105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3116105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MPRPLACLQE NPVPPFLSKT YDLVDDRTLD PIISWGSTGE SFVVWDPAEF ARLVLPRNFK  60
HNNFSSFVRQ LNTYGFHKID NDRWEFANES FRRGEKRLLK NIHRRRSTQS QQVGSHTGSL  120
TEAGRSGLES EVERLRKEWS VMMQEVIELQ QQQSGTVHHV QSVNQRLQAA EQRQKQMVSF  180
LAKLFQNPAF LARLKQKKEQ GEIGSSRMRR KFVKYQQHQH ALSESSMENK IMKYIPDWRN  240
ITLSSVVPDT SPVSTDQSPD HVSEGTGLGS ETMPLLEIVA PDEFAISDEL GVGQGFIKTP  300
EQVGEGQSSM QFEDPNLKGK IVTNLQNEAG LEYSLSFPED LGMEKSFPEL SSPGMERIVK  360
QDDVWSLAFN TSAGMSSSSN VSWDNLFKYD VPELGSTGGF LDFWDIGPEQ AGGDLSMDKW  420
MGDENPVDES DSQAGQPKDD I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-231311017125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191199ARLKQKKEQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0208s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139790.0KP013979.1 Populus simonii heat shock transcription factor A3 (HsfA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381313.20.0heat stress transcription factor A-3
TrEMBLA0A0N7DK260.0A0A0N7DK26_9ROSI; Heat shock transcription factor A3
STRINGPOPTR_0006s11680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-101heat shock transcription factor A3