PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0207s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 274aa    MW: 31441 Da    PI: 9.8041
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0207s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-12149251194
                             EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT- CS
                      B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egD 78 
                             f+k+lt sd     +rl++ k  a+++       +++ +e++ +t +d +g+++e+ ++++ ++ + vl +GWk F ++++L+ + D
  SapurV1A.0207s0180.1.p 149 FEKQLTESDLRDDqSRLSINKADAQKYlypllneDENLAEGISVTTYDHNGKEFEMVFKIWVSKIH-VLIGGWKAFFHEHRLRkDQD 234
                             89***99998776699***************988666669999****************9**9865.6666***********9899* PP

                             EEEEEE-SS.SEE..EE CS
                      B3  79 fvvFkldgr.sefelvv 94 
                             fv++ + +r ++++l++
  SapurV1A.0207s0180.1.p 235 FVTLWMFRRlDTKKLCF 251
                             ***98777767666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-14149253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-15149251IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-9149253IPR003340B3 DNA binding domain
CDDcd100171.18E-15149253No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEKEDKKLMK LEIVDKDDYP EELKEQGAAA LLLSCLPYTR FSYETALTLD KLKSDILGGG  60
KRNRNSSSSR KRPRVFPTQN LGAAVSKNHF DDKQGEYNSN AAAAARNLPR KPPIRRSEET  120
LKLIGNYEPH EVPSIPGLNG IIGKCSKPFE KQLTESDLRD DQSRLSINKA DAQKYLYPLL  180
NEDENLAEGI SVTTYDHNGK EFEMVFKIWV SKIHVLIGGW KAFFHEHRLR KDQDFVTLWM  240
FRRLDTKKLC FVITWRSLPG VTTPIKRERV RMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0207s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2798591e-178GU279859.1 Populus balsamifera isolate MGR10 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2798611e-178GU279861.1 Populus balsamifera isolate POR11 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2798631e-178GU279863.1 Populus balsamifera isolate INU03 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2798701e-178GU279870.1 Populus balsamifera isolate FBK13 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798711e-178GU279871.1 Populus balsamifera isolate FBK13 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2798721e-178GU279872.1 Populus balsamifera isolate FRE01 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798731e-178GU279873.1 Populus balsamifera isolate FRE01 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2798741e-178GU279874.1 Populus balsamifera isolate RNA13 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798801e-178GU279880.1 Populus balsamifera isolate NWL07 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798821e-178GU279882.1 Populus balsamifera isolate WHR03 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798841e-178GU279884.1 Populus balsamifera isolate STO11 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798851e-178GU279885.1 Populus balsamifera isolate STO11 haplotype B hypothetical protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006370221.11e-163uncharacterized protein LOC18095551
TrEMBLB9N1E31e-162B9N1E3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s40760.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.12e-27B3 family protein