PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0199s0230.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 619aa MW: 71624.8 Da PI: 8.2988 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.3 | 4.7e-22 | 50 | 133 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w+v ++ leHnH SapurV1A.0199s0230.2.p 50 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLADSKRWRVLEVMLEHNH 131 69*****************************************9988.....99********************************* PP FAR1 88 el 89 +l SapurV1A.0199s0230.2.p 132 SL 133 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.8E-19 | 50 | 133 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.4E-29 | 252 | 345 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.891 | 500 | 536 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 0.001 | 510 | 532 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 511 | 538 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 619 aa Download sequence Send to blast |
MAEAGCSNER VTNGELNERE KELDDETGEK KEFVAPAVGM EFESYDDAYN YYNCYAKEVG 60 FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMV RMRLADSKRW 120 RVLEVMLEHN HSLGVKKYRP VKKVSTGNKR KSLSSSDAEG RTIKLYRALV IDSEGNGKSS 180 LNARDVMNSS EHPDQLNLKR GDAQAIYNYF CRMQLTNPNF FYLMDLNDEG HLRNVFWVDA 240 RSRVSCGYFG DVVYIDNTYL LSKFEIPLVA FVGMNHHSHS VLLGCGLLAG ETTESYIWLF 300 KAWITCMSGS SPQTIITDRC RTLQDAIAEA FPRAHHCFGL SHIMKRVPEK LGGLRHYDAL 360 KKTFMKAVYD TLKVIEFEAA WGFMVQRFGV GNHEWLQSLY EDRVRWVPVY LKDTVFAGMS 420 AARPDIESRT VSPALKTRCS FELQLSKMYS KEIFKKFQFE VEEMYSCFST TQIHADRPII 480 IFLVKERVMG ESSRREIRDY EVLYNRTAGE VRCICSCFNF YGYLCRHALC VLNFNGVEEI 540 PCKYILPRWK KDYKRLYIPD HSSIDVDSTD HRKWFNQLYS SALQVVEEGV ISLEHYSVAL 600 EAFEESLNRV REVEEKQA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0199s0230.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385298.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | B9MWN4 | 0.0 | B9MWN4_POPTR; Uncharacterized protein | ||||
STRING | XP_006492084.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0199s0230.2.p |
Publications ? help Back to Top | |||
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