PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0196s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 494aa    MW: 53768.6 Da    PI: 7.7836
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0196s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1531.1e-1661147191
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             ++Y +YA++vGF + +++s+   ++g+ t   + Cs+ gk++   k+   + + +++++t+Ckak+++ ++ +g++++ +++l+HnH
  SapurV1A.0196s0200.1.p  61 DYYYSYAHRVGFGIMRRSSRCD-DDGRLTYIVLSCSQCGKDRGIPKS---RFEWKQTSKTNCKAKINLVLNPQGQFHICNVVLDHNH 143
                             59**************998887.8999**************999888...77889999***************************** PP

                    FAR1  88 elap 91 
                             el+p
  SapurV1A.0196s0200.1.p 144 ELTP 147
                             *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1461147IPR004330FAR1 DNA binding domain
SuperFamilySSF1009502.9E-33247393No hitNo description
HamapMF_0017028.176247472IPR020672Ribose-5-phosphate isomerase, type A, subgroup
Gene3DG3DSA:3.40.50.13601.1E-42249388No hitNo description
CDDcd013981.24E-78250464IPR004788Ribose 5-phosphate isomerase, type A
TIGRFAMsTIGR000216.4E-56251468IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060261.9E-46297468IPR004788Ribose 5-phosphate isomerase, type A
SuperFamilySSF754454.45E-19377454No hitNo description
Gene3DG3DSA:3.30.70.2606.9E-23389452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEMESNSLVD VPLKKDIKAS SGDDNEKVDE HGVSGVLLNG DGEVETPKIG MVFASQEEVR  60
DYYYSYAHRV GFGIMRRSSR CDDDGRLTYI VLSCSQCGKD RGIPKSRFEW KQTSKTNCKA  120
KINLVLNPQG QFHICNVVLD HNHELTPGKL HPNICKKSKS FRTRKGREGK EQAGMMLHPD  180
FQSIFGEPLG SEAASPDSVK QQPSFSNHLL NGDRHLLCSY TGLPTGEMIS NRLKRRSLAL  240
EGSQNSQDSL RQALAKRAVA LVKSGMVIGV GTGRTLTLVI DEIGKLIQEG KLKDIAAVGT  300
NYQSRIIARQ YGMTTVDLND VNDVDIAFDV VDEVDINKNL LKCRGASHTV QKVVDSMAKV  360
CILLVEHTKV VHRLGSNIPV AVEVLPIAVS PVLRRLIALG GVPEIRSASR KDGSVITDLG  420
NMIVDVSFPS GIQNPADLEK NINMIPGVVD NGIFSAVATL VLVAVRDGGN IKVMNLEEFL  480
EGVIGHRDAS SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lk5_A4e-482484684223D-Ribose-5-Phosphate Isomerase
1lk5_B4e-482484684223D-Ribose-5-Phosphate Isomerase
1lk5_C4e-482484684223D-Ribose-5-Phosphate Isomerase
1lk5_D4e-482484684223D-Ribose-5-Phosphate Isomerase
1lk7_A4e-482484684223D-Ribose-5-Phosphate Isomerase
1lk7_B4e-482484684223D-Ribose-5-Phosphate Isomerase
1lk7_C4e-482484684223D-Ribose-5-Phosphate Isomerase
1lk7_D4e-482484684223D-Ribose-5-Phosphate Isomerase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0196s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027247.10.0PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic
TrEMBLA0A2K1ZWF00.0A0A2K1ZWF0_POPTR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-10FAR1-related sequence 6