PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0196s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 503aa    MW: 54646.6 Da    PI: 8.7343
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0196s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.62e-1877166291
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             +Y++YA ++GF+  k++ +ks ++g+++  t+ Cs++gk+ ++ ++ ++ + r+r   rt+Ckakl+v+   dg+ +v ++ leHnH
  SapurV1A.0196s0190.1.p  77 YYDKYACHLGFNSIKKS-TKSGDDGNVKYFTLACSRSGKELPSASQtSKFNFRKRLPPRTNCKAKLNVTIGPDGRVYVCRVILEHNH 162
                             9**********987775.66779999**************99998833446679999****************************** PP

                    FAR1  88 elap 91 
                             el+p
  SapurV1A.0196s0190.1.p 163 ELVP 166
                             **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-1677166IPR004330FAR1 DNA binding domain
HamapMF_0017029.287256483IPR020672Ribose-5-phosphate isomerase, type A, subgroup
SuperFamilySSF1009501.71E-35256404No hitNo description
Gene3DG3DSA:3.40.50.13603.8E-45260397No hitNo description
TIGRFAMsTIGR000211.4E-59261476IPR004788Ribose 5-phosphate isomerase, type A
CDDcd013983.07E-80261473IPR004788Ribose 5-phosphate isomerase, type A
PfamPF060265.1E-49310476IPR004788Ribose 5-phosphate isomerase, type A
SuperFamilySSF754454.06E-19386462No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-23398461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009052Biological Processpentose-phosphate shunt, non-oxidative branch
GO:0004751Molecular Functionribose-5-phosphate isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEDDSKMNVI IDTKMNVTVE KDMEGRNDKM VVDSDEVNEV IIINIDENES EGVGNDDEIK  60
PPSIGMVFNT PDEVRSYYDK YACHLGFNSI KKSTKSGDDG NVKYFTLACS RSGKELPSAS  120
QTSKFNFRKR LPPRTNCKAK LNVTIGPDGR VYVCRVILEH NHELVPGLHG MKKKKSRAPR  180
AKKVGTGQSH VPHSVAHEAG SSANLKSDYA IPRIVTDPNQ IIFGSSHLLT KRSVNRNVSS  240
GSKRRYSVFA NPVLNQESTE RILARKAVEF VKSGMVIGLG SGTTISMVME ELGRLIREGK  300
LKDIIAVGGN YQSRVLARQF GVTIVDLSGV SKIDIAFDGV DEVDFNKNLL KCGGPAHTVQ  360
KVIDSVASEC IILVDQPKVV HRLGSAFPVP VEVLPPALTP VLKRLANLGG APEIRFTSND  420
NGPLFTDLGN MVVDVSFPNG IQNPAELEKN IKLLPGVVEN GIVTGVATTV LVAVKDRGAV  480
NVMSLEDYVR TVLDRRDASL TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1lk5_A2e-492544761222D-Ribose-5-Phosphate Isomerase
1lk5_B2e-492544761222D-Ribose-5-Phosphate Isomerase
1lk5_C2e-492544761222D-Ribose-5-Phosphate Isomerase
1lk5_D2e-492544761222D-Ribose-5-Phosphate Isomerase
1lk7_A2e-492544761222D-Ribose-5-Phosphate Isomerase
1lk7_B2e-492544761222D-Ribose-5-Phosphate Isomerase
1lk7_C2e-492544761222D-Ribose-5-Phosphate Isomerase
1lk7_D2e-492544761222D-Ribose-5-Phosphate Isomerase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0196s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2779589e-63GU277958.1 Populus balsamifera isolate FRE01 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779599e-63GU277959.1 Populus balsamifera isolate FRE01 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779609e-63GU277960.1 Populus balsamifera isolate GAL12 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779619e-63GU277961.1 Populus balsamifera isolate GAL12 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779629e-63GU277962.1 Populus balsamifera isolate GIL14 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779639e-63GU277963.1 Populus balsamifera isolate GIL14 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779649e-63GU277964.1 Populus balsamifera isolate HAY07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779659e-63GU277965.1 Populus balsamifera isolate HAY07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779669e-63GU277966.1 Populus balsamifera isolate INU03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779679e-63GU277967.1 Populus balsamifera isolate INU03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779689e-63GU277968.1 Populus balsamifera isolate MGR10 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779699e-63GU277969.1 Populus balsamifera isolate MGR10 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779709e-63GU277970.1 Populus balsamifera isolate NWL07 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779719e-63GU277971.1 Populus balsamifera isolate NWL07 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779729e-63GU277972.1 Populus balsamifera isolate RNA13 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779739e-63GU277973.1 Populus balsamifera isolate RNA13 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779749e-63GU277974.1 Populus balsamifera isolate STO11 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779759e-63GU277975.1 Populus balsamifera isolate STO11 haplotype B putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779769e-63GU277976.1 Populus balsamifera isolate WHR03 haplotype A putative pyruvate decarboxylase gene, partial sequence.
GenBankGU2779779e-63GU277977.1 Populus balsamifera isolate WHR03 haplotype B putative pyruvate decarboxylase gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307978.20.0probable ribose-5-phosphate isomerase 3, chloroplastic isoform X1
TrEMBLB9H9330.0B9H933_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1642057
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-10FAR1 family protein