PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0187s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GATA
Protein Properties Length: 376aa    MW: 42160.6 Da    PI: 4.6127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0187s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.2e-16209245135
                    GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                             C++Cgt+   Tp +Rrgp g++tLCnaCGl+++ kg+
  SapurV1A.0187s0160.1.p 209 CQHCGTSAkeTPAMRRGPAGPRTLCNACGLMWANKGT 245
                             ******9999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.10166101IPR010399Tify domain
SMARTSM009798.0E-566101IPR010399Tify domain
PfamPF062006.4E-870100IPR010399Tify domain
PROSITE profilePS5101713.066140182IPR010402CCT domain
PfamPF062031.5E-15140181IPR010402CCT domain
SMARTSM004014.7E-11203256IPR000679Zinc finger, GATA-type
CDDcd002022.45E-16208252No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14208250IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.04E-11208257No hitNo description
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
PfamPF003206.1E-14209245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MVKKMEMVNP QRHKKVRKGR DYHNRRAMQI EGGDFDYGYG FDDGMISANN NINGVVINNG  60
NDSVFESTRT SELTIAFEGE VYVFPAVTPS KVQAVLFLLG EPETSTIAPS SEFLLQQNAR  120
VFLVSPSAGD ASQGLKHSRR VASLVRFREK RKERCFEKKV RYTCRKEVAQ RMHRKKGQFA  180
SLNDCYGTDT GNWEPNNGMP NPEFDLLRCQ HCGTSAKETP AMRRGPAGPR TLCNACGLMW  240
ANKGTLRDLN KGGRQISINQ NELVTPDFKP STIERENPFD NPDEEESQEE SKPVPLDSDN  300
SQRPNEQDLL ETDETVPDPL PMHVENSSTN LDDEDFENTL DELGDVSGSE FEIPEHFDDQ  360
VDIEDSSTGT EWPGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0187s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166014e-49AC216601.1 Populus trichocarpa clone POP091-G07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380338.20.0GATA transcription factor 24 isoform X1
SwissprotQ8GXL73e-57GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2K1ZSZ90.0A0A2K1ZSZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.17e-48ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]