PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0185s0180.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 387aa    MW: 43915.4 Da    PI: 6.8818
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0185s0180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.74.7e-09425325
                            S---SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                            +++C++fa+ G C++Gd CkF H
  SapurV1A.0185s0180.2.p  4 RKPCKYFAQ-GACWRGDHCKFVH 25
                            79*******.************* PP
2zf-CCCH24.16.4e-083657426
                            ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                              C f+++ G C yG+rCk+ H+
  SapurV1A.0185s0180.2.p 36 NVCTFYQK-GNCTYGSRCKYEHV 57
                            57******.***********997 PP
3zf-CCCH22.51.9e-07100123226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++lC+ f   G C++Gd+C+F Hg
  SapurV1A.0185s0180.2.p 100 DRPLCS-FDVAGDCPHGDKCSFFHG 123
                             689***.***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.432128IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5227IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-7325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-7430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2253259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-63356IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-53358IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-63557IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-43756IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.09898125IPR000571Zinc finger, CCCH-type
SMARTSM003560.1299124IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4100123IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.24E-13158227No hitNo description
Gene3DG3DSA:3.30.40.109.4E-11160224IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.54E-4166223No hitNo description
PfamPF000974.3E-5167220IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.15167221IPR001841Zinc finger, RING-type
SMARTSM001845.9E-7167220IPR001841Zinc finger, RING-type
PROSITE patternPS005180191200IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010311.779250279IPR000571Zinc finger, CCCH-type
SMARTSM003560.72251278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSQRKPCKYF AQGACWRGDH CKFVHERKEP QPLSRNVCTF YQKGNCTYGS RCKYEHVKSS  60
WVASGGAAGA SSSSMSPHQS VILSSVPACA VSSRNSKKED RPLCSFDVAG DCPHGDKCSF  120
FHGDLCPTCG KHSLHPFRAD EREEHLKSCE KNQKFHVAVK QSEEIECCVC LDRVLSKPTA  180
AERKFAVLPE CDHPFCISCI RNWRNGSPAS GMALRACPIC RKTSHFVIPS LIWYSSKEEK  240
QEIIDTYKAR LRKIDCKHFN FGNGNCPFSI NCFYKHTVMP GSYTWKHHKP PPRRPPPRRR  300
SNAGHMDSSF DYLGPAMEDL LDLFDDDYLD YDNYCDPFHE GYQLDIFDYE DYFEEEHLSP  360
FDMALLLAGM DCGGASDISS DEDDFY*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0185s0180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455057.10.0E3 ubiquitin-protein ligase makorin isoform X2
SwissprotQ6IDS61e-108C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2K2AU450.0A0A2K2AU45_POPTR; C3H family protein
STRINGPOPTR_0004s14200.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-109C3H family protein