PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0181s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 407aa    MW: 46053.3 Da    PI: 5.0216
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0181s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34141052102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+ye+++d+++++++sws++++sf v+++ e+a+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +
  SapurV1A.0181s0030.1.p  14 FLTKTYEMVDDPSTDSIVSWSQSNKSFTVWNPPELARVLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANEDFIR 91 
                             9***************************************************************9998.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+ +++++i+r+k 
  SapurV1A.0181s0030.1.p  92 GQPHSMKNIHRRKP 105
                             ***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.4E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3710103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDESPGTSNS LPPFLTKTYE MVDDPSTDSI VSWSQSNKSF TVWNPPELAR VLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANEDFI RGQPHSMKNI HRRKPVHSHS SQNLQGQGLN  120
LLADSERQSM KDDIEKLKRD KQVLILEIQK QEQERKGFEM QIEGLKEKLQ QTERRQQTIV  180
SFVARALPKP GLALNLMPQL EVHDRKRRLP RIGYLYSEAS NEDNQVATSQ ALSRENADGN  240
SVTLLNMEQF EQLESSLTFW ENMVHDIGQT CNSNTSTIEI DDSTSGAQIP AISCVQLNVD  300
FHPKPPDIDM NSEPSAAVAP DPVSPKQPAA GTAPTVATGV NDVFWEQFLT ENPGSTDAHE  360
VQSERKDSDG REGEIKPVDP GKFWWNMRNV NNLTEQIGHL TPTERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23410317129Heat shock factor protein 1
5d5v_B2e-23410317129Heat shock factor protein 1
5d5v_D2e-23410317129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0181s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139820.0KP013982.1 UNVERIFIED: Populus simonii heat shock transcription factor A4b3-like (HsfA4b3) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316809.10.0heat stress transcription factor A-4c
SwissprotO494031e-137HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLB9I1G80.0B9I1G8_POPTR; Uncharacterized protein
STRINGPOPTR_0011s06820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-128heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]