PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0180s0250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 229aa MW: 25539 Da PI: 10.3557 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 122.9 | 3.8e-38 | 41 | 199 | 79 | 244 |
GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerL 165 a+ ++ Pi ++ +lta qa+ e v +++++H iD++i G+QW aL+qaLa+R++ +l+iT+vg +++ee g+rL SapurV1A.0180s0250.1.p 41 LAHLSVHQKAPINQIMQLTAIQAMKENVGSARKIHLIDLEIWSGVQWTALMQALADRQSRLDRLKITAVGL---RGIQKIEENGKRL 124 2233378889************************************************************9...5799********* PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244 + fA+++++pf f+++ ++ +++++ e +++ +E+++V + l ++l+++++l++ ++ ++k+++P +++v e+ SapurV1A.0180s0250.1.p 125 ETFAKSMNLPFTFKPVEVSCMSEIKEELFETAADETVVVVANMILRTMLSRPACLQN----LMGVIKNINPSLMIVGEN 199 *************************************************99999999....***************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.238 | 1 | 228 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-35 | 41 | 199 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MFIQFAEALR LRNDKATGRF PPAEMKGKPK CVTPHGLSTH LAHLSVHQKA PINQIMQLTA 60 IQAMKENVGS ARKIHLIDLE IWSGVQWTAL MQALADRQSR LDRLKITAVG LRGIQKIEEN 120 GKRLETFAKS MNLPFTFKPV EVSCMSEIKE ELFETAADET VVVVANMILR TMLSRPACLQ 180 NLMGVIKNIN PSLMIVGENG NCLIVGWEGA PLHSLSARKF SRERPWRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-17 | 3 | 198 | 45 | 241 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0180s0250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002320295.3 | 1e-123 | DELLA protein RGL2 | ||||
TrEMBL | A0A3N7FYM8 | 1e-122 | A0A3N7FYM8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s11510.1 | 1e-119 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF479 | 33 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-21 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0180s0250.1.p |