PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0176s0120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 296aa MW: 32324.6 Da PI: 6.6014 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.6 | 2.2e-32 | 154 | 211 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C vkk+vers+edp++v++tYeg+H h+ SapurV1A.0176s0120.1.p 154 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCIVKKRVERSSEDPTTVITTYEGQHCHH 211 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.5E-32 | 138 | 211 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-28 | 145 | 211 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.01 | 148 | 213 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.8E-37 | 153 | 212 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-25 | 154 | 211 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDDTENPDPG TEFTSESSWT RGPGSDRANC FFSNHGENSI LCEFGWNLQP DEPARFRDLD 60 PVEAEERSDL AGNLEIQQLQ GPSPAGSGGG GADVSTSNYP SVSSSSSEDL PDKSTGSGGK 120 PPEIPSTKVK KKGQKRIRQP RFAFVTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT 180 NSKCIVKKRV ERSSEDPTTV ITTYEGQHCH HTAGFPRGGI ISHEATFSSH MTPPTSQFHY 240 PGMRLPRENP PSTVVQSQPL PVGAREGNTV HVPTQTPQLP TDEGLLGDIV PPGMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-25 | 146 | 210 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-25 | 146 | 210 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0176s0120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377431 | 0.0 | GQ377431.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 11 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002311329.2 | 0.0 | probable WRKY transcription factor 57 | ||||
Refseq | XP_024461923.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Refseq | XP_024461924.1 | 0.0 | probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 4e-69 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | B9HID0 | 0.0 | B9HID0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10814 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 3e-65 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0176s0120.1.p |
Publications ? help Back to Top | |||
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