PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0173s0310.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 191aa MW: 21606.6 Da PI: 6.7978 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.3 | 8.5e-18 | 8 | 44 | 15 | 51 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 Rrng++KK LSvLCd++va+++fsstgklye+s+ SapurV1A.0173s0310.1.p 8 HRRNGLIKKVRDLSVLCDVQVALLVFSSTGKLYEFST 44 7**********************************96 PP | |||||||
2 | K-box | 41.8 | 4.7e-15 | 81 | 158 | 22 | 99 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +k k+ e L+ +R + + e+L+l +L+q e q++ +l++ R++K++l+le+++ l +k + l+een+ L++++ SapurV1A.0173s0310.1.p 81 KKFKSCAELLRIIHRSFEDSNFEELTLSDLEQTEMQIDAALRHTRARKMQLMLESMNALHEKVETLREENQLLQTQVS 158 5788899999999*************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.79E-17 | 7 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-14 | 8 | 23 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.3E-8 | 9 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-15 | 9 | 42 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.577 | 9 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-14 | 23 | 44 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.548 | 73 | 163 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.5E-11 | 82 | 157 | IPR002487 | Transcription factor, K-box |
Gene3D | G3DSA:1.20.5.170 | 5.6E-4 | 122 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MNASDLWHRR NGLIKKVRDL SVLCDVQVAL LVFSSTGKLY EFSTAGSVAK ILKRRRSHFE 60 EKAALSNGAN DAELYHGKYE KKFKSCAELL RIIHRSFEDS NFEELTLSDL EQTEMQIDAA 120 LRHTRARKMQ LMLESMNALH EKVETLREEN QLLQTQVSAM NNSFETNGMV PGSFEPPSGF 180 PQEQATLSLL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 57 | KRRRSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0173s0310.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452186.1 | 5e-94 | MADS-box transcription factor 14 isoform X2 | ||||
TrEMBL | A0A2K2B8F1 | 7e-92 | A0A2K2B8F1_POPTR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14472 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 2e-29 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0173s0310.1.p |