PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0172s0230.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 757aa    MW: 83913.8 Da    PI: 6.8813
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0172s0230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.43.9e-15414452341
                     TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                             +++C+Ck+s+Clk+YCeCfaag +C ++C+Ce+C+Nk e
  SapurV1A.0172s0230.1.p 414 CRRCKCKRSRCLKLYCECFAAGIYCLDTCSCENCFNKPE 452
                             789*********************************976 PP
2TCR43.37.4e-14500538139
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                             ++kkgCnCkkskC kkYCeCf+ag+ C + C+Ce+C N 
  SapurV1A.0172s0230.1.p 500 RHKKGCNCKKSKCSKKYCECFQAGVGCCNGCRCEGCYNP 538
                             589**********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-16412453IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.223413540IPR005172CRC domain
PfamPF036383.8E-11415450IPR005172CRC domain
SMARTSM011141.4E-13500541IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-9502537IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MKNTALISVI EEFDLYVVSE MRRVAGSDVY RQSDIQPKPQ LMPCFQNEIQ SYSSSGCIDE  60
HLADPFNGDN IMNSSMSGPT SHKETATEAD DTYAGDGKGK VVRSDQTGEE LPSVSMNFFE  120
VTAREKETER FGEFLQCLSG NVDDHVESDI LGGTFSGEQH HELFSPQNIE LQAAGAQNNK  180
LGASFQIFPE SLQRYSKESL GSLSKESVKE ADQPHRGIRR HLHFGTHETA SLCLPARQTD  240
FESLVPPHDE TRTISGSWQA RSCSQTAKSR PSFSPPACES VRAAQNCGNR AVNSIIRSES  300
VGSEPSKVKK LGSNLHQQEE KLMSYGIPFL SFYGEIYSHL GYEQHESQGS FSYQSSGSIQ  360
PPCDSLHLIP YEQQATLCKG TMPSSEYADI VELNQMSPER NRKKAKYTIK SEGCRRCKCK  420
RSRCLKLYCE CFAAGIYCLD TCSCENCFNK PEYEETVLDM RQVTETRNPL AFAPKVVTNA  480
TNSPANMMEK GSLMKPSSSR HKKGCNCKKS KCSKKYCECF QAGVGCCNGC RCEGCYNPYG  540
KKPETIYRRA ERWNNPSQEQ QHSLLESPGD CIKAERPNQF SSTWEELAGI GHLTPPSHCL  600
LGEVASSGSL NTRDCSKKLA GQLQQESSVL SPSGYLNWNH SPISLSPKLY GREALHELCS  660
DSFLCDIMED ATPETPKNTC TPSTEGVKSW SPNQKWVSPP KIRSHELRSG SSQRLRSGCK  720
FILQDLPSFP PLTPYSKSQA AIHQNDGDHK GSTGYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1241753714120Protein lin-54 homolog
5fd3_B2e-1241753714120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0172s0230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035657.10.0PREDICTED: uncharacterized protein LOC105133384 isoform X3
TrEMBLA0A3N7EFQ60.0A0A3N7EFQ6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF142771417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.15e-31Tesmin/TSO1-like CXC domain-containing protein