PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0170s0110.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 356aa    MW: 38643.7 Da    PI: 8.6761
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0170s0110.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.2e-121135327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                            +++C+++++tGtCk+G++CkF+H++
  SapurV1A.0170s0110.2.p 11 QPECQYYLKTGTCKFGATCKFHHPR 35
                            799********************96 PP
2zf-CCCH38.42.1e-125781327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                            + +C +++rtG+CkyG++CkF+H++
  SapurV1A.0170s0110.2.p 57 EIECAYYLRTGQCKYGSTCKFHHPQ 81
                            568********************97 PP
3zf-CCCH38.22.3e-12216242127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +++++C+f+++tG Ck+G+ C+F+H++
  SapurV1A.0170s0110.2.p 216 PGQPECQFYMKTGDCKFGAVCRFHHPR 242
                             5789*********************96 PP
4zf-CCCH40.25.6e-13262288127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++lC+f++r+G Ck+G++CkF H++
  SapurV1A.0170s0110.2.p 262 PGEPLCMFYSRYGSCKFGPSCKFDHPM 288
                             589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.159836IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-6835IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-51435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0565482IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-65481IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-105781IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-65882IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-56080IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596215243IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6215242IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-9217242IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6219245IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5221243IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234261289IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7261288IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10263288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5264288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4266286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMGEFPERIG QPECQYYLKT GTCKFGATCK FHHPRDKAGI SGRVSLNILG YPLRPGEIEC  60
AYYLRTGQCK YGSTCKFHHP QPANVMVPLR GSPVYPTVNS PTTPGQQSYP GGLPTNWSRA  120
SFITSPRWQA PSNYTPLILP QGVVSVPGWN AYSGQLGSVS SPESQQQTGN SQIYGTSRQS  180
ESVNAGSQGT FSPYRSGSVP LGFYALQRES VFPERPGQPE CQFYMKTGDC KFGAVCRFHH  240
PRERLIPTPD CVLSPIGLPL RPGEPLCMFY SRYGSCKFGP SCKFDHPMGI FTYNLTASSS  300
ADAPVRRLLG SSSGSAALTL SSEGLVEAES TKPRRLSLSE PRQMPPGDDN IDIGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0170s0110.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164701e-155AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325901.30.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024447147.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1WQ100.0A0A2K1WQ10_POPTR; C3H family protein
TrEMBLA0A2K1WQ170.0A0A2K1WQ17_POPTR; Uncharacterized protein
STRINGXP_002512627.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-143zinc finger protein 1