PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0170s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C3H | ||||||||
Protein Properties | Length: 450aa MW: 48666.9 Da PI: 8.3238 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.7 | 3e-11 | 58 | 84 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p SapurV1A.0170s0110.1.p 58 PGEPDCSYYIRTGLCRFGPTCRFNHPP 84 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 105 | 129 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ SapurV1A.0170s0110.1.p 105 QPECQYYLKTGTCKFGATCKFHHPR 129 799********************96 PP | |||||||
3 | zf-CCCH | 38 | 2.8e-12 | 151 | 175 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+CkyG++CkF+H++ SapurV1A.0170s0110.1.p 151 EIECAYYLRTGQCKYGSTCKFHHPQ 175 568********************97 PP | |||||||
4 | zf-CCCH | 37.8 | 3.1e-12 | 310 | 336 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ SapurV1A.0170s0110.1.p 310 PGQPECQFYMKTGDCKFGAVCRFHHPR 336 5789*********************96 PP | |||||||
5 | zf-CCCH | 39.8 | 7.5e-13 | 356 | 382 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC+f++r+G Ck+G++CkF H++ SapurV1A.0170s0110.1.p 356 PGEPLCMFYSRYGSCKFGPSCKFDHPM 382 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.84 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-8 | 59 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 62 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-4 | 63 | 83 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 102 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-6 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-10 | 105 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 106 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-5 | 108 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.056 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.7E-6 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-10 | 151 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 152 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 154 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-6 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-9 | 311 | 336 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 313 | 339 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.0E-5 | 315 | 337 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 355 | 383 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5E-7 | 355 | 382 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-10 | 357 | 382 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 358 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 360 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MDFDAGIPMS RGGGGGGGGL PAVTEETSMS PSLSEDAMWQ MNLRSSEAME AGPYPERPGE 60 PDCSYYIRTG LCRFGPTCRF NHPPNRKLAI ATAKMMGEFP ERIGQPECQY YLKTGTCKFG 120 ATCKFHHPRD KAGISGRVSL NILGYPLRPG EIECAYYLRT GQCKYGSTCK FHHPQPANVM 180 VPLRGSPVYP TVNSPTTPGQ QSYPGGLPTN WSRASFITSP RWQAPSNYTP LILPQGVVSV 240 PGWNAYSGQL GSVSSPESQQ QTGNSQIYGT SRQSESVNAG SQGTFSPYRS GSVPLGFYAL 300 QRESVFPERP GQPECQFYMK TGDCKFGAVC RFHHPRERLI PTPDCVLSPI GLPLRPGEPL 360 CMFYSRYGSC KFGPSCKFDH PMGIFTYNLT ASSSADAPVR RLLGSSSGSA ALTLSSEGLV 420 EAESTKPRRL SLSEPRQMPP GDDNIDIGG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0170s0110.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216470 | 1e-154 | AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325901.3 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2K1WQ17 | 0.0 | A0A2K1WQ17_POPTR; Uncharacterized protein | ||||
STRING | XP_002512627.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0170s0110.1.p |