PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0169s0020.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 315aa MW: 33563.3 Da PI: 9.6889 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.5 | 1.2e-38 | 74 | 158 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++ +as+ +a+ s++ s SapurV1A.0169s0020.3.p 74 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTVPASALTAAGGAISQQGAS 158 789*************************************************************999998884444444444222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-31 | 79 | 168 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 80 | 134 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDPKGPNSKN PHELPTFLSP THTSPRTPPQ PHHQQPQHLH NHQLQPNMRE IKPAEIKDFQ 60 IVVADKEVQK KQLAPKRSSN KDRHTKVEGR GRRIRMPALC AARIFQLTRE LGHKSDGETI 120 QWLLQQAEPS IIAATGTGTV PASALTAAGG AISQQGASLS AGLHQKIDDI GGSSSSRTSW 180 AMLGGSLGRP HQVTNTGLWP PVGGYGFQSS SNNTDPSTTN IGSEGDGGST YLQKNGFPGF 240 DLAGNNIGPM NYTSILGVGS QQLPGLELGL SQDGHIGVLS PQALSQIYQQ MGQARVQQHQ 300 QQNPSKDDSQ GSGQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00005 | PBM | Transfer from 484486 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0169s0020.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209004 | 0.0 | AC209004.1 Populus trichocarpa clone POP042-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373221.1 | 1e-172 | transcription factor TCP20 | ||||
Refseq | XP_024448074.1 | 1e-172 | transcription factor TCP20 | ||||
Refseq | XP_024448075.1 | 1e-172 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 3e-81 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | B9N0Z2 | 1e-170 | B9N0Z2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s09820.1 | 1e-171 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-74 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0169s0020.3.p |