PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0168s0400.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23581.9 Da    PI: 10.5693
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0168s0400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.7e-29959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien+snrqvtfskRrng+lKKA+ELS+LC+aev++i+fs++gk++ ++s
  SapurV1A.0168s0400.1.p  9 KRIENSSNRQVTFSKRRNGLLKKAFELSILCEAEVSLIVFSPSGKFHQFAS 59
                            79***********************************************86 PP
2K-box66.68.7e-2380171899
                   K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                             ++ ++  e ++ e++ L+k i++ + ++Rh++Ged+e L lkeL+qLe+qL+++ ++iRskK++ + e+++ l+ k  +lq+en +L
  SapurV1A.0168s0400.1.p  80 DQRSRSLEFWKCEIEELRKTINKTEAQLRHFIGEDIELLGLKELKQLERQLKTGAERIRSKKKRAISEHVSLLKSKLSDLQKENARL 166
                             46777899******************************************************************************* PP

                   K-box  95 rkkle 99 
                             +k+l 
  SapurV1A.0168s0400.1.p 167 QKRLH 171
                             *9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.015161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-31289IPR002100Transcription factor, MADS-box
CDDcd002659.71E-37270No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014866.3E-2183170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.12486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGKVELKR IENSSNRQVT FSKRRNGLLK KAFELSILCE AEVSLIVFSP SGKFHQFASH  60
DMERSVARYR SEVGRPGQND QRSRSLEFWK CEIEELRKTI NKTEAQLRHF IGEDIELLGL  120
KELKQLERQL KTGAERIRSK KKRAISEHVS LLKSKLSDLQ KENARLQKRL HELPDANVSS  180
RIPEANECDA FHQRRIFLDG SQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22190189MEF2 CHIMERA
6byy_B1e-22190189MEF2 CHIMERA
6byy_C1e-22190189MEF2 CHIMERA
6byy_D1e-22190189MEF2 CHIMERA
6bz1_A1e-22190189MEF2 CHIMERA
6bz1_B1e-22190189MEF2 CHIMERA
6bz1_C1e-22190189MEF2 CHIMERA
6bz1_D1e-22190189MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0168s0400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247950.0CU224795.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321711.11e-126truncated transcription factor CAULIFLOWER D
TrEMBLA9PA191e-124A9PA19_POPTR; Uncharacterized protein
STRINGGorai.007G043400.11e-85(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-35AGAMOUS-like 20