PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0163s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 227aa MW: 24896.1 Da PI: 8.4978 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.6 | 8.8e-18 | 63 | 117 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F++ ++++ +++e LA +l+L rqV vWFqNrRa+ k SapurV1A.0163s0040.2.p 63 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSK 117 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.8 | 2.5e-37 | 63 | 151 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeL SapurV1A.0163s0040.2.p 63 RKKLRLSKEQSRLLEESFRQRHTLNPRQKEALALQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 149 69************************************************************************************* PP HD-ZIP_I/II 88 ree 90 r + SapurV1A.0163s0040.2.p 150 R-A 151 9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 48 | 117 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-18 | 51 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-15 | 61 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.63E-15 | 62 | 120 | No hit | No description |
Pfam | PF00046 | 4.7E-15 | 63 | 117 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.4E-22 | 119 | 162 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.1E-9 | 119 | 153 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAVSPSSISS LELTMSMPGF SSSPSFPSSD LDINQLPSGA GEEEWITAGM DDEEESTNGG 60 PPRKKLRLSK EQSRLLEESF RQRHTLNPRQ KEALALQLKL RPRQVEVWFQ NRRARSKLKQ 120 TEMECEYLKR WFGSLTEQNR RLQREVEELR ALKVGPPTVI SPHSCEPLPA STLTMCPSCE 180 RVTTTGSDKG STKTTTTAEA TPATAATLSS KVGAPALQSR QSSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0163s0040.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462431.1 | 1e-137 | homeobox-leucine zipper protein HOX3 isoform X2 | ||||
Swissprot | Q0JKX1 | 2e-82 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 2e-82 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A3N7FED6 | 1e-136 | A0A3N7FED6_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_022041m | 1e-129 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 9e-68 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0163s0040.2.p |