PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0161s0200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 317aa MW: 34947.8 Da PI: 9.9185 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.7 | 2.7e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qk+ SapurV1A.0161s0200.1.p 97 PWTEEEHRRFLFGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKH 141 8******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.541 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.08E-17 | 92 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-16 | 93 | 144 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-8 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-11 | 96 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.90E-8 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 5.4E-10 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MVVGSSSAVS GGEGAAETKP KEIRLFGVRV VVDNFRRNVS LNNVSEYQYY REIMPNTNND 60 NNDEEEDAGA GYMSADDTVH HSSSASGRRG ERKRGVPWTE EEHRRFLFGL QKVGKGDWRG 120 ISRNFVKTRT PTQVASHAQK HFLRLNSVNR RRRRTSLFDI TADTVTSMPK EEQEAHRQDS 180 NGNNHASPSN PPLPPPLQAN SITSFSGVPA IPTRTVNPSV LPLEIENPIM ENQSLGQGHQ 240 FINHSTNLVR PVPVVDPSPR TSAMPDLNLN LKPTGDSSSL SLKLSLPFDQ RESTSRSSAF 300 QAMSSLKNGD KFIFVA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 154 | RRRRRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00631 | PBM | Transfer from PK23829.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0161s0200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145942 | 3e-74 | EF145942.1 Populus trichocarpa clone WS0114_H05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322138.1 | 1e-159 | transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 1e-58 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | B9IEJ9 | 1e-157 | B9IEJ9_POPTR; MYB-like family protein | ||||
STRING | POPTR_0015s08020.1 | 1e-158 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4248 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 1e-39 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0161s0200.1.p |
Publications ? help Back to Top | |||
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