PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0161s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 30497.1 Da PI: 4.8812 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.6 | 2.5e-39 | 10 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCa+Ck++rrkC+++C+lapyfp +qpk f+n+hklFG++++lk+l++l+ +++e+am+s++y+A++r r Pv+G+ g+i kl+ q+ SapurV1A.0161s0030.1.p 10 ACASCKYQRRKCSSECPLAPYFPPDQPKMFQNAHKLFGVRKILKILENLESHQQEEAMRSIIYQANIRDRFPVHGCWGIICKLHFQI 96 7************************************************************************************** PP DUF260 88 eqlkaelallk 98 +q+++el+++ SapurV1A.0161s0030.1.p 97 RQVEEELHAVL 107 *******9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.377 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-37 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MTLKGGTSQA CASCKYQRRK CSSECPLAPY FPPDQPKMFQ NAHKLFGVRK ILKILENLES 60 HQQEEAMRSI IYQANIRDRF PVHGCWGIIC KLHFQIRQVE EELHAVLAHL EMYRQQQQQI 120 AALTEDVTSQ LELGMAPPQP CLAQQYSYSI IGSNIGYSSN YLDSNDNVGN SLWGQHPYAT 180 NYDTSSMPII QSQLVASQPL ASQQEEVQNY DEMHPFFDTI DDRQSYIETK EPYESSSEES 240 LKDTAPSMEH AAENELKSAA ACFTLTSIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-29 | 6 | 123 | 7 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-29 | 6 | 123 | 7 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0161s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321540.1 | 1e-178 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 9e-58 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | B9IEH6 | 1e-176 | B9IEH6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07780.1 | 1e-177 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 5e-45 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0161s0030.1.p |
Publications ? help Back to Top | |||
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