PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0154s0250.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 849aa MW: 96350.1 Da PI: 6.5099

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0154s0250.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.6	5.1e-24	95	179	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY++YA +vGF +++++s++sk+ng++++ + Cs+ g+++e++ + ++r+ t+t+Cka +++k+++d+kw+++++++eHnHe SapurV1A.0154s0250.2.p 95 FYRDYALSVGFGITIKASRRSKKNGKFIDVKIACSRFGSKRESSVT----VNPRSCTKTNCKAGMHMKRTEDDKWVINNFVKEHNHE 177 9**************************************99888....99********************************* PP FAR1 89 la 90 ++ SapurV1A.0154s0250.2.p 178 IC 179 98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-21	95	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-23	262	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.025	541	577	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-5	542	574	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-6	552	579	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 849 aa Download sequence Send to blast
MEIDLELPSS DQAKLESRVN TNECIIDSAS ELRGVDEAAS SCLVEEVVET WGLNAIDGGD 60 KVDESGVGVD GVGEGGIFVP QIGLKFETKE AAYAFYRDYA LSVGFGITIK ASRRSKKNGK 120 FIDVKIACSR FGSKRESSVT VNPRSCTKTN CKAGMHMKRT EDDKWVINNF VKEHNHEICK 180 EDYDNATGRR NKQSGAVACP KKGLQLALDE EDVKVMLEYF MCKQAENPIF FYAIDLDHEK 240 RMRNVFWIEA KGRHDYHNFC DVVFFDTLYV SSKYKLPFVP IIGVNNHSQF LLLGCALIGE 300 HSASSFLWLM HTWLKAVGGQ APKVVITDQE GFLNEAVVDV FPDTRHYYSL WHVLSKIPEN 360 LSPVVNQSEI MLKFNKCIYQ SQTDEQFEKR WWKMVDKFEL REDEWVHSLY ENRIKWVPIF 420 IRDISLAGMS TTERSGSIAS FFEKYIHREA VFKEFMEQYK AFLDDGYEME AKAEFETQNK 480 QPALRSLSSF EKQASKLYTE AIFKKFQVEV LGIVSCRLQK ESEDEATINF RVDDFEEHQN 540 FLVSWNKSTL DICCICRSFE YRGYLCKHAI LVLQVSGVSN IPPHYILKRW TKGAKVNHTV 600 DKVSNSLHYR VQRFNELCKQ AIKLGKEASL SKEAYDIAVR TLEEVLENCV GLNNSAKSVI 660 EPNPLDVLGF PGFEEENCNN CLAKSSKKKR TYKKKKVYSE AGGIKTDLQE SYQQMDNINS 720 RAHLTDNCYI PQQDTQEELG SRAPNLEGYY GSQEGTQGVG QLNPISPFRD GYYSNQQGLP 780 VLGQLHLIPS HASHYGAPLS MQALGQLGFR APTMQASFSN LPDMEQPVSS AQYHGIASKH 840 LHDKHLSS*

Sequence ? help Back to Top

Protein Sequence Length: 849 aa Download sequence Send to blast

MEIDLELPSS DQAKLESRVN TNECIIDSAS ELRGVDEAAS SCLVEEVVET WGLNAIDGGD  60
KVDESGVGVD GVGEGGIFVP QIGLKFETKE AAYAFYRDYA LSVGFGITIK ASRRSKKNGK  120
FIDVKIACSR FGSKRESSVT VNPRSCTKTN CKAGMHMKRT EDDKWVINNF VKEHNHEICK  180
EDYDNATGRR NKQSGAVACP KKGLQLALDE EDVKVMLEYF MCKQAENPIF FYAIDLDHEK  240
RMRNVFWIEA KGRHDYHNFC DVVFFDTLYV SSKYKLPFVP IIGVNNHSQF LLLGCALIGE  300
HSASSFLWLM HTWLKAVGGQ APKVVITDQE GFLNEAVVDV FPDTRHYYSL WHVLSKIPEN  360
LSPVVNQSEI MLKFNKCIYQ SQTDEQFEKR WWKMVDKFEL REDEWVHSLY ENRIKWVPIF  420
IRDISLAGMS TTERSGSIAS FFEKYIHREA VFKEFMEQYK AFLDDGYEME AKAEFETQNK  480
QPALRSLSSF EKQASKLYTE AIFKKFQVEV LGIVSCRLQK ESEDEATINF RVDDFEEHQN  540
FLVSWNKSTL DICCICRSFE YRGYLCKHAI LVLQVSGVSN IPPHYILKRW TKGAKVNHTV  600
DKVSNSLHYR VQRFNELCKQ AIKLGKEASL SKEAYDIAVR TLEEVLENCV GLNNSAKSVI  660
EPNPLDVLGF PGFEEENCNN CLAKSSKKKR TYKKKKVYSE AGGIKTDLQE SYQQMDNINS  720
RAHLTDNCYI PQQDTQEELG SRAPNLEGYY GSQEGTQGVG QLNPISPFRD GYYSNQQGLP  780
VLGQLHLIPS HASHYGAPLS MQALGQLGFR APTMQASFSN LPDMEQPVSS AQYHGIASKH  840
LHDKHLSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0154s0250.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU230043	1e-150	CU230043.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443605.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X2
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A3N7G1T3	0.0	A0A3N7G1T3_POPTR; Uncharacterized protein
STRING	POPTR_0016s01960.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Link Out ? help Back to Top
Phytozome	SapurV1A.0154s0250.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]