PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0151s0220.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C3H | ||||||||
Protein Properties | Length: 372aa MW: 40178.3 Da PI: 7.1373 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 93 | 118 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y ++C+FaH++ SapurV1A.0151s0220.2.p 93 FKTKLCCKFRA-GTCPYISNCNFAHSM 118 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.5 | 3.6e-06 | 165 | 190 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ SapurV1A.0151s0220.2.p 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 77888********************7 PP | |||||||
3 | zf-CCCH | 42.9 | 7.9e-14 | 251 | 276 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg SapurV1A.0151s0220.2.p 251 WKTRICNKWELTGYCPFGNKCHFAHG 276 8************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.79E-8 | 90 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-14 | 90 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.065 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-4 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-6 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-9 | 162 | 192 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.24E-7 | 163 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 164 | 192 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.058 | 164 | 191 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-17 | 246 | 280 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-10 | 247 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.981 | 250 | 278 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-9 | 250 | 277 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-11 | 251 | 276 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MDYNRDFSGG NAVHIFPILG PENWIPNSSD SNSVWATEDD YREWHNFDVL NDNASSNSNY 60 QSSTRSGSEL PNKKSKNNSQ ELNSKKSIGK MFFKTKLCCK FRAGTCPYIS NCNFAHSMEE 120 LRRPPPNWQE IVASHEEEKG NTVDVIEEFQ IPSIVGFGAE TQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG GSGAGIGVLG GGGGGGGGGG GGGGGGGNAA 240 SNAVNMKPSN WKTRICNKWE LTGYCPFGNK CHFAHGVGEL HRYGGGLVDT EAKDSSSVPV 300 ESKQGGMPSK TPPETVVASV TSVPHSDVYH LGVSSQRSSI LIHRPGQRTH QKWKGPDRIS 360 RIYGDWIDDI E* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0151s0220.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304341.2 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q9LQM3 | 1e-128 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | B9GZ92 | 0.0 | B9GZ92_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s09240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-127 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0151s0220.2.p |