PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0149s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ZF-HD | ||||||||
Protein Properties | Length: 327aa MW: 35715.6 Da PI: 7.8263 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.2 | 8.5e-33 | 58 | 114 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 ++v YkeClkNhAas Gg a+DGCgEfmp+++++ ++a+lkCaACgCHRnFHRre+ SapurV1A.0149s0160.1.p 58 TEVSYKECLKNHAASFGGLALDGCGEFMPKPTTTpQDPASLKCAACGCHRNFHRREP 114 5799****************************9999*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-21 | 60 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-28 | 60 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.7E-30 | 62 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.206 | 62 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 185 | 253 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.12E-15 | 185 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.7E-25 | 191 | 248 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MTKAMDLTSI PHHISKSPDS DTDTETPLQT HLTKALSLNG SYKTHQNHCF APPPEQHTEV 60 SYKECLKNHA ASFGGLALDG CGEFMPKPTT TPQDPASLKC AACGCHRNFH RREPFGPATL 120 MQPALNWTTS PSPGSTSSGP SPSPTSPASP TPQSFYPSAP HMLLALSTGH PDDTQLQIQG 180 HSLVMTSSHG KKRARTKFSR EQKERMYLFA EKLGWRMPRG NNDRDVEEFC SEIGVNRNVF 240 KVWMHNNRSR KEKVSDSYGI DSSNRCGFNV NEELAAGTVN GTDNKGYSFD NDDNGSSHDR 300 CQIESKVHVN GSMNPHGSST SSLIKG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-17 | 192 | 249 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0149s0160.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148556 | 1e-146 | EF148556.1 Populus trichocarpa x Populus deltoides clone WS0134_B05 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017078.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 11-like | ||||
Swissprot | Q9SEZ1 | 2e-58 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | B9HI66 | 1e-171 | B9HI66_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s08560.1 | 1e-172 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 2e-53 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0149s0160.1.p |
Publications ? help Back to Top | |||
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