PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 369aa    MW: 41606.4 Da    PI: 5.3303
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.32.1e-1638124599
                             -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                             ++ps+v+   +l l kkf+++h   + e++ ++l desg++ + k+    ++++  l++GW++F  +++L egD++vF+l++ ++f 
  SapurV1A.0140s0320.1.p  38 MLPSHVSGGFWLGLCKKFCDDHL--PSEDTVIVLDDESGKTSQTKY--LAHKSG--LSGGWRGFSVDHNLVEGDVLVFHLVKPTRF- 117
                             789*****************995..335678999************..555555..9**********************9987777. PP

                             .EEEEE-S CS
                      B3  92 lvvkvfrk 99 
                              +v v+r+
  SapurV1A.0140s0320.1.p 118 -KVYVVRA 124
                             .7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010199.0E-1934125IPR003340B3 DNA binding domain
PROSITE profilePS5086310.98334125IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-1836125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-2136125IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-1438123IPR003340B3 DNA binding domain
CDDcd100171.46E-2338123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAILEANTQQ ANRGRSSKVK GIEMVLASTK TNTKKQYMLP SHVSGGFWLG LCKKFCDDHL  60
PSEDTVIVLD DESGKTSQTK YLAHKSGLSG GWRGFSVDHN LVEGDVLVFH LVKPTRFKVY  120
VVRANSSEEV DGALALLKFD SSVKQMNPYH APLVEAEMEY QDLEYLYLNN PEENNTMPGI  180
SNARLVSDHS ENESEDFGFE ITDGIRMSET VIDFKEVSSF EDFDILVNGL VINCELSKHL  240
QMKYYELCCS QKCFLHENFI EGLNCKLIAG IISETINIAD AIRASKITTS YDYLTTWEKT  300
LKAFLGLGMK VDFLLARLER LFNLSLKSEK HKKARLDKDN AEEGMRILEK DNAGNLELRF  360
QELAKAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445899.10.0B3 domain-containing protein Os01g0234100
TrEMBLA0A3N7G7P00.0A0A3N7G7P0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-35B3 family protein