PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0138s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 30661.3 Da PI: 5.525 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.1 | 3e-38 | 10 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 aCa+Ck++rrkC+++C+lapyfp eqpk f+n+h+lFG++++l++l++l+ ++e+am+s++y+A++r r Pv+G++g+i +l+ q+ SapurV1A.0138s0160.1.p 10 ACASCKYQRRKCSSECPLAPYFPPEQPKMFQNAHRLFGVRKILRILENLDSPQKEEAMRSIIYQANIRDRFPVHGCLGIICQLHFQI 96 7************************************************************************************** PP DUF260 88 eqlkaelallk 98 +q+++el ++ SapurV1A.0138s0160.1.p 97 RQMEEELRAVY 107 ******98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.793 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-36 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MTLKGGTSQA CASCKYQRRK CSSECPLAPY FPPEQPKMFQ NAHRLFGVRK ILRILENLDS 60 PQKEEAMRSI IYQANIRDRF PVHGCLGIIC QLHFQIRQME EELRAVYAHL EMYRQHHHHQ 120 IEALTEDVPS QLELGMALPQ PCLAQQYSYS MGSNIGYSSS FLDSNENVGN SLWGQHPYAT 180 NNNTNSKPVI QSQLVASQPL STQQEVVQDY DEMHSFFDII DDRQSYIETK EPYDSSSEES 240 LKDTTQSMEH VAENELKSAA ACFSLTSVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-27 | 6 | 114 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-27 | 6 | 114 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0138s0160.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042621.1 | 0.0 | PREDICTED: LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 5e-65 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | U5FZC1 | 1e-180 | U5FZC1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s07390.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-67 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0138s0160.1.p |
Publications ? help Back to Top | |||
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